Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23430 476 / 1e-170 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 473 / 1e-169 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 469 / 6e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 370 / 7e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 358 / 5e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 272 / 3e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 270 / 4e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 231 / 5e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 126 / 2e-33 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 114 / 4e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035481 [exp] 644 / 0 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 545 / 0 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 523 / 0 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032281 [exp] 507 / 0 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 506 / 0 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 506 / 0 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 488 / 3e-175 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 488 / 7e-175 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 463 / 1e-165 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 498 / 2e-179 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 457 / 3e-163 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 452 / 2e-161 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 431 / 6e-153 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 431 / 3e-152 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 421 / 5e-149 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 367 / 9e-128 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124508 [exp] 270 / 4e-89 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 270 / 4e-89 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 263 / 2e-86 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10031101 pacid=23166874 polypeptide=Lus10031101 locus=Lus10031101.g ID=Lus10031101.BGIv1.0 annot-version=v1.0 ATGTGGATCTTTGGATGGAAAGGTGCATCTGGGTTCTCAGGTCGTTCCACTGCTGAGGAAGTTACTAATGGAATCGACGCAACTGGCCTTACTGCAATCG TCACAGGAGCGTCAAGCGGAATTGGTGTGGAGACATCACGGATCCTGGCTCTGCGTGGTGCTCATGTGGTTATGGCAGTAAGGAATGTTGAAGCTGGCAA GAGTGTCCAGGAAGCAATCCTCAAGGAAATTCCCACTGCTAAGGTTGATGTTATGGAGCTGGATCTCAGTTCAATGGCATCAGTTAAGAAATTTGCGTCT GAATACGTTTCTTCTGGCCTTCCACTGAATCTCCTGATTAACAATGCAGGCATCATGATGATCCCTTTCACTCATTCTGCAGACAAGATAGAGTTACAGT TTGCTACAAACCATGTCGGACATTTCCTGTTGACACATCTTTTGTTGGACACAATGAAAGCTACTGCTCGAGAGAGTAATCAAGAAGGAAGAATCGTTAA TCTATCATCAGAAGGTCACCGTTTGACGTACACGGAAGGAATTCGTTTTGACAAGATCAACAATGAAGCAGAGTACAACAAGATGCGTGCCTATGGGCAG TCAAAGCTTGCTAACATCCTTCATGCTAATGAGCTTGCAAGGCGTCTCAAGGAAGAAGGAATCAATTTAACTGCCAACTCGCTTCATCCTGGAGCAATTG CAACGAATCTTGCCCGCTATCATGGTGTTCTTAATGCCATTACAAATACAATTGGCAAATATGTGATAAAAAATGTTCAACAGGGAGCTGCAACTACATG CTACGTTGCTCTGCATCCGCAAGTGAAAGGGGTGACGGGCGAATACTTCTCTGACAGCAATCTATACAAACCACACCCTCAGGCAACGGATGAAGAATTG GCAAAGAAGCTGTGGGATTTCAGCTTGGAGTTGACCAACCCCTTCTGTTAA
AA sequence Show only first row Show all	>Lus10031101 pacid=23166874 polypeptide=Lus10031101 locus=Lus10031101.g ID=Lus10031101.BGIv1.0 annot-version=v1.0 MWIFGWKGASGFSGRSTAEEVTNGIDATGLTAIVTGASSGIGVETSRILALRGAHVVMAVRNVEAGKSVQEAILKEIPTAKVDVMELDLSSMASVKKFAS EYVSSGLPLNLLINNAGIMMIPFTHSADKIELQFATNHVGHFLLTHLLLDTMKATARESNQEGRIVNLSSEGHRLTYTEGIRFDKINNEAEYNKMRAYGQ SKLANILHANELARRLKEEGINLTANSLHPGAIATNLARYHGVLNAITNTIGKYVIKNVQQGAATTCYVALHPQVKGVTGEYFSDSNLYKPHPQATDEEL AKKLWDFSLELTNPFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	0	1
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	1.0	0.8937
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10000763 [exp]	1.4	0.8932
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	2.8	0.8666
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	3.5	0.8924
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	6.0	0.8500
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	7.5	0.8854
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	8.5	0.8635
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	8.9	0.8636
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	9.2	0.8759
AT1G26580			unknown protein		Lus10026655 [exp]	9.8	0.8450

Compare expression of checked genes

Lus10031101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.