Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12800 429 / 2e-152 SDRB, DECR short-chain dehydrogenase-reductase B (.1) AT2G07640 196 / 5e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 88 / 2e-20 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT2G29260 88 / 7e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 87 / 1e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 87 / 1e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G07440 85 / 4e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G17845 86 / 5e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G62610 83 / 4e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G54870 83 / 4e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031746 [exp] 543 / 0 AT3G12800 463 / 4e-166 short-chain dehydrogenase-reductase B (.1) Lus10018323 [exp] 402 / 5e-142 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10017129 [exp] 399 / 8e-141 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10020019 [exp] 98 / 8e-24 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10015542 [exp] 90 / 8e-21 AT4G05530 385 / 2e-136 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10019777 [exp] 89 / 2e-20 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001430 [exp] 88 / 4e-20 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001560 [exp] 89 / 7e-20 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 87 / 2e-19 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G025400 [exp] 451 / 1e-161 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.012G125900 [exp] 438 / 3e-156 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.006G089700 [exp] 97 / 3e-23 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 94 / 4e-22 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 91 / 2e-21 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022400 [exp] 91 / 3e-21 AT4G05530 330 / 4e-115 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.011G022500 [exp] 90 / 6e-21 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.008G149201 [exp] 89 / 2e-20 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 87 / 8e-20 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 86 / 4e-19 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10031170 pacid=23150978 polypeptide=Lus10031170 locus=Lus10031170.g ID=Lus10031170.BGIv1.0 annot-version=v1.0 ATGAGTTCTTCTCCTTCTCCGTTCAAGGAAGATATACTGAAAGGGAAGGTGGTTTTGATAACAGGAGGAGGATCGGGAATTGGATTTGAGATATCTACCC AGTTGGGCAAGCATGGAGCTTCAATTGCGATCATGGGTCGCCGGAGGTCCGTTCTTGACGCCGCCGTCGCCACTCTCCGATCCCAAGGAATTCAAGCTGT AGGGTTTGAAGGGGATGTTCGTAAGCCTGAGGATGCCAAAAGAGTAATTGAATCAACTTTCCAACAATTGGGAAGGATTGACATCCTTGTAAACGCTGCA GCTGGCAATTTCCTTGCCTCTCCTGAGGATTTGTCCCCTAATGGCTTCCGAACAGTTATAGATATTGATGCTGTGGGAACTTTCACAATGTGTCATGCTG CACTCAACTATCTAAAGAAAGGAGGGCTCGGTCGAGATTCGTCGGAAGGGGGAGGGACGATATTGAACATTAGTGCCACTTTGCATTATACAGCAGCTTG GTATCAAATCCATGTATCTGCAGCCAAGGCAGCTGTGGATGCTATAGCTAGAAATTTAGCTCTGGAGTGGGGGACTGATTACGACATCAGAGTGAACGGG ATCGCTCCAGGTCCGATCGGAGACACTCCCGGGATGAGCAAGCTCGCACCGGATGAGATCCTCAGCAGAACGATAGAGTTCATGCCCTTGTATAAGCTAG GGGAGAAATGGGATATTGCAATGGCTGCTCTATACCTTGTATCTGATGCTGGGAAATATGTCAATGGAACGACGATTCCGGTGGATGGTGGACTATGGCT GAGCAAGCCTCGCCATATAGCGAAGGATGCAATGAAGCAGATATCTCGAGCTGTCGAAAAGCGTTCCAGAGATAAACCTGTTGGGGTTCCTTCCAGCAAG CTTTAA
AA sequence Show only first row Show all	>Lus10031170 pacid=23150978 polypeptide=Lus10031170 locus=Lus10031170.g ID=Lus10031170.BGIv1.0 annot-version=v1.0 MSSSPSPFKEDILKGKVVLITGGGSGIGFEISTQLGKHGASIAIMGRRRSVLDAAVATLRSQGIQAVGFEGDVRKPEDAKRVIESTFQQLGRIDILVNAA AGNFLASPEDLSPNGFRTVIDIDAVGTFTMCHAALNYLKKGGLGRDSSEGGGTILNISATLHYTAAWYQIHVSAAKAAVDAIARNLALEWGTDYDIRVNG IAPGPIGDTPGMSKLAPDEILSRTIEFMPLYKLGEKWDIAMAALYLVSDAGKYVNGTTIPVDGGLWLSKPRHIAKDAMKQISRAVEKRSRDKPVGVPSSK L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	0	1
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	1.0	0.9684
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	2.0	0.8805
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	3.0	0.8795
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	4.0	0.8793
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	4.5	0.8748
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10000763 [exp]	4.6	0.8650
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	5.2	0.8634
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10041800 [exp]	5.5	0.8665
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	6.9	0.8519
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	7.1	0.8598

Compare expression of checked genes

Lus10031170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.