Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 247 / 4e-74 GRAS RGL2 RGA-like 2 (.1) AT1G66350 236 / 1e-70 GRAS RGL1 RGA-like 1 (.1) AT5G17490 231 / 2e-68 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 227 / 3e-66 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 224 / 9e-66 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G21450 182 / 5e-50 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 181 / 5e-50 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 177 / 1e-49 GRAS SCL21 SCARECROW-like 21 (.1) AT5G41920 176 / 5e-49 GRAS GRAS family transcription factor (.1) AT1G50600 177 / 4e-48 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031748 [exp] 1034 / 0 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10036932 [exp] 302 / 1e-95 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10037055 [exp] 300 / 8e-95 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10017930 [exp] 287 / 1e-89 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10041540 [exp] 262 / 1e-78 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 262 / 1e-77 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10017626 [exp] 226 / 1e-65 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 224 / 4e-65 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10014786 [exp] 203 / 2e-58 AT2G01570 186 / 7e-53 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095100 [exp] 560 / 0 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.015G091200 [exp] 304 / 3e-96 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 303 / 5e-96 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.001G326000 [exp] 246 / 9e-73 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 237 / 4e-70 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 237 / 4e-70 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 227 / 5e-66 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 220 / 1e-63 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G473200 [exp] 201 / 6e-58 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.012G020200 [exp] 193 / 4e-55 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10031172 pacid=23150970 polypeptide=Lus10031172 locus=Lus10031172.g ID=Lus10031172.BGIv1.0 annot-version=v1.0 ATGGAATCCATGAACAACATCCTCTCCTTCCCGGCCGACGACATCACTACCCTTCTTAACAGCCACGACCTCGCCATCCGACGATTCTGCCCCGCTCGCC TCAACCACCAACACGAACCACCATTTTGTTCGAACTTTGGTACTACCGACATCACGTATAATCAACAGCTGATGGATGGAGAACGAATATCAGCATCATC ATCTTCTGAGGAGATTCATTACATCAACGACGACAACACTCCCTATTATTACCATGATCACAACACATCTGCCGTCGCTGCCGCTGGCATCGCCCACAGC AACGGACGCTCCGAGGTGGATGAATTCGTTAACGGTTTCATCAATGCCGATCCCAACAATCATACAGGCTTCCATCTTTTTCAAGACGAAATGGAAGCCT TCGACTTTATGTTCGACCATCATCGTGATCATTCGCCTTCCATGGTGATGGCCGACGATCATGAGATGGATATGATCAAACCCTCCTCTTTCCAAGACCT ACTAGCACTTCCTAGTCATGAAGATGTCCGTGACTCTGACCGTGATCATAGTCAGGATCAAGGTCAAAATCAACGCGTAGCAGCAGAAGCAGTAGACCAA GGTCTAAACTTGGTCCACTTGCTTTTGGCTTGCGCGGAGGCAGTGGGGTGTCGAGACACTCATTTGGCCGAATCGTTACTCAACCAGATCTGGTCGTCGG TTAACCCGTGGGGCGATTCGTTACAACGAGTCTCCCATTGCTTTGCAATGGGACTCAAATCGAGACTCTCTCTCCTCCTCAACAATGTAAACCCCAACGG TACTTTCGCCAACGGCGGTGCAGCCAACGATGTCTCGTCTTCGATCAGTACCGGAGAACAGCGGCTTGAAGCTTTCCACCTCCTTCACCAAACCACTCCT TACATCGCCTTCGGATTCATGGCGGCAAACGAAGCAATTGTTCAAGCAGCTACAGGAAAAAACTATCTTCATATAATCGATCTAGGCACTGAACACACTC TCCAATGGCCTTCACTTCTCCGATCTCTGTCCTCCAGAACCGGTGGACCGCCGGCCAGAATCCGAATCACAGGGTTGATGAACAAGAACAACAACGATCC GATCTCAAATCTCGCCCTGGAATTACAATCCAGGATGAAATCACTAGCTCAGGAAGCTCGATCGATCGGAATCACCGGATTCGAATTCAACCTAATTCCT GACACAGTCTCGCCGTCGCTGTTCAATTCGGAAACTCTCGACCTGAGACCAGGCGAGACTCTGTTCGTCAACGGAGTAATGAACATGCACAAGTTCGTCA AGGAAAGCAGAGGCTCCCTGAAGGCGATCCTCCAGGCGATCAAGAAACTGGCGCCGGCGTTACTGACGGTGGTGGAGCAGGACGCGAATCACAACGGTCC GTTCTTCCTGGGAAGGTTTCTGGAGTCGCTTCACTACTACTCCGCCATTTTCGATTCTCTCGAGGCGATCCCCTGTCTGCGGAGGAACAGCGCGGAGAGA GTGAAGATGGAGACGCGGCATTTCGGGGAGGAGATTCGGAACATTGTGGCGTACGAAGGGTCGGATCGGGTGGAGAGGCACGAGAGGGCGGATCAATGGC GGAGGCAGCTCGGGAGGGCGGGGTTTCAGGCTGTGGAGATGAAGTGTGCGAGCCAAGCTAGGATGTTGATGTCGGCTTATGGTTGTGATGATGGTGATGG ATTTACGGTGGCCAGTGAGAAAGGGTTTATGTTGCTGGGTTGGAAAGGTCGGCCGATCTTGCTTGCTTCTGCTTGGCAAGTTCATCCTCATCATCACCAT AGTTCATAG
AA sequence Show only first row Show all	>Lus10031172 pacid=23150970 polypeptide=Lus10031172 locus=Lus10031172.g ID=Lus10031172.BGIv1.0 annot-version=v1.0 MESMNNILSFPADDITTLLNSHDLAIRRFCPARLNHQHEPPFCSNFGTTDITYNQQLMDGERISASSSSEEIHYINDDNTPYYYHDHNTSAVAAAGIAHS NGRSEVDEFVNGFINADPNNHTGFHLFQDEMEAFDFMFDHHRDHSPSMVMADDHEMDMIKPSSFQDLLALPSHEDVRDSDRDHSQDQGQNQRVAAEAVDQ GLNLVHLLLACAEAVGCRDTHLAESLLNQIWSSVNPWGDSLQRVSHCFAMGLKSRLSLLLNNVNPNGTFANGGAANDVSSSISTGEQRLEAFHLLHQTTP YIAFGFMAANEAIVQAATGKNYLHIIDLGTEHTLQWPSLLRSLSSRTGGPPARIRITGLMNKNNNDPISNLALELQSRMKSLAQEARSIGITGFEFNLIP DTVSPSLFNSETLDLRPGETLFVNGVMNMHKFVKESRGSLKAILQAIKKLAPALLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEAIPCLRRNSAER VKMETRHFGEEIRNIVAYEGSDRVERHERADQWRRQLGRAGFQAVEMKCASQARMLMSAYGCDDGDGFTVASEKGFMLLGWKGRPILLASAWQVHPHHHH SS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	0	1
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10042742 [exp]	1.4	0.9038
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	5.1	0.7857
					Lus10021285 [exp]	5.3	0.7836
					Lus10003927 [exp]	6.8	0.7885
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	7.9	0.8401
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	9.3	0.7458
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10040325 [exp]	10.0	0.8378
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	10.5	0.8391
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10008073 [exp]	11.0	0.7859
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	11.7	0.7298

Compare expression of checked genes

Lus10031172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.