Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79180 122 / 5e-32 MYB ATMYB63 myb domain protein 63 (.1) AT1G16490 119 / 5e-31 MYB ATMYB58 myb domain protein 58 (.1) AT1G56160 119 / 7e-31 MYB ATMYB72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, myb domain protein 72 (.1) AT3G12820 100 / 1e-24 MYB ATMYB10 myb domain protein 10 (.1) AT3G23250 98 / 3e-23 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G31180 97 / 5e-23 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G02940 91 / 2e-20 MYB ATMYB107 myb domain protein 107 (.1) AT4G12350 89 / 7e-20 MYB ATMYB42 myb domain protein 42 (.1) AT4G22680 88 / 8e-20 MYB ATMYB85 myb domain protein 85 (.1) AT5G16600 89 / 2e-19 MYB ATMYB43 myb domain protein 43 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031758 [exp] 301 / 6e-101 AT1G79180 190 / 2e-58 myb domain protein 63 (.1) Lus10021871 [exp] 92 / 1e-21 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10041145 [exp] 91 / 4e-21 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021185 [exp] 91 / 6e-21 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 91 / 1e-20 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10003557 [exp] 89 / 1e-19 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10015369 [exp] 89 / 1e-19 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10033889 [exp] 88 / 2e-19 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10039743 [exp] 85 / 9e-19 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067600 [exp] 132 / 3e-35 AT1G16490 229 / 2e-73 myb domain protein 58 (.1) Potri.005G096600 [exp] 128 / 1e-33 AT1G16490 232 / 1e-74 myb domain protein 58 (.1) Potri.008G166700 [exp] 103 / 6e-25 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 93 / 1e-21 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G164900 [exp] 93 / 3e-21 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.004G033100 [exp] 94 / 4e-21 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G224100 [exp] 92 / 5e-21 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.019G118200 [exp] 92 / 1e-20 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.011G041600 [exp] 92 / 2e-20 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G018200 [exp] 89 / 2e-20 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031181 pacid=23150975 polypeptide=Lus10031181 locus=Lus10031181.g ID=Lus10031181.BGIv1.0 annot-version=v1.0 ATGGGTAAAGGAAGAGCTCCTTGCTGCGACAAGAGTCAAGTCAAGAGAGGCCCTTGGAGCCCTGCTGAGGACTTGCGCCTCATGTCATTCATCCAGAAGT ACGGCCATGAAAACTGGCGAGCTCTGCCCAAACAAGCTGACTCCTCTGTTTTTTTTCCTGAATATCGCCGTCGAATTCCAATCTGGGCGGTTCAGATTGG AATTTTGTCGATTTTCGTCTTCGCCGTCAGTTCAAGAACTGGAAATCTCTCGAACTTTACGGTTTTGGAATTTGGAAAACGTTCGACGGAATTCAAAAAC AGGGGATGGCAAAAAACAGGGGAAGCTCAGTTTTTGAAGTGGTCAAAAATTGCATCGCGTCTGCCCGGAAGAACAGACAACGAGATAAAAAACGTTTGGA ACACTCACTTAAAGAAGAGACTATCGTCCTCGTTGTCGAAAAATAATGAGCTGGCAAATGATTCATCGTCACCGACATCTTCGTCATCATCTTCTTCACT TTCCTCCACCACAACCTCCTTGGGGAAGAAGAGGAACAGTACTGAAACAGAGACCGACTGTCAACAAAAACAGAGGACTAAGAAACAGAGGATTACTGAG GAAGAATCGGACGATGAAGAAGACGAAGACGAAGAGGGAGAAATTGAAGATGGGTTCATCAACGTTGATGAATTGAAGGACGAATCAAAAGGAATTTCAA GCTCCTCTGTTTCTTCACTACTCGTTACGAACTCCGGCCAAATCGACAATGTTGTTACGGTAGAGGGCCAAATCGATTCGTTGTTCGAGCTTGGTGAATC GGCAGGGAATTTATTTGATGATCTCGATTTCCGGATCTCGTCGGAGCCCGTAGAAGATATGGAATTCTGGAGCTTGTTGGATGGAATAATCGGGGAAGTT AGTACTGATCAACAGCCTACCGGCGAAGTTGTCGGAATTGGGGATAGTGATATTGACATGGGAGTTCAGTTGGTTGATGACGGAGTGGATGATAATCAGA AATGGCTGCGTTATTTGGAGACTGAACTGGGGCTTGAGGAGATCAACAATGGCGGAAATACTGATAAGAAGAACCAGGAAGACTGCAAAGTGCAGGGGAT AGAAGGAAACTGA
AA sequence Show only first row Show all	>Lus10031181 pacid=23150975 polypeptide=Lus10031181 locus=Lus10031181.g ID=Lus10031181.BGIv1.0 annot-version=v1.0 MGKGRAPCCDKSQVKRGPWSPAEDLRLMSFIQKYGHENWRALPKQADSSVFFPEYRRRIPIWAVQIGILSIFVFAVSSRTGNLSNFTVLEFGKRSTEFKN RGWQKTGEAQFLKWSKIASRLPGRTDNEIKNVWNTHLKKRLSSSLSKNNELANDSSSPTSSSSSSSLSSTTTSLGKKRNSTETETDCQQKQRTKKQRITE EESDDEEDEDEEGEIEDGFINVDELKDESKGISSSSVSSLLVTNSGQIDNVVTVEGQIDSLFELGESAGNLFDDLDFRISSEPVEDMEFWSLLDGIIGEV STDQQPTGEVVGIGDSDIDMGVQLVDDGVDDNQKWLRYLETELGLEEINNGGNTDKKNQEDCKVQGIEGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031181 [exp]	0	1
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031758 [exp]	1.0	0.9728
AT2G26800			Aldolase superfamily protein (...		Lus10026823 [exp]	1.4	0.9592
AT1G72300			Leucine-rich receptor-like pro...		Lus10016395 [exp]	2.6	0.9227
AT4G27270			Quinone reductase family prote...		Lus10018401 [exp]	3.9	0.9299
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	13.0	0.9353
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	13.7	0.9446
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	20.6	0.9029
AT3G19895			RING/U-box superfamily protein...		Lus10000199 [exp]	22.2	0.8551
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031326 [exp]	22.4	0.9213
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	22.6	0.9080

Compare expression of checked genes

Lus10031181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.