Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03060 828 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G16930 817 / 0 AAA-type ATPase family protein (.1) AT2G18330 673 / 0 AAA-type ATPase family protein (.1) AT4G36580 645 / 0 AAA-type ATPase family protein (.1) AT3G19740 85 / 8e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 82 / 6e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G64110 77 / 1e-14 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G05530 77 / 1e-14 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT4G28000 77 / 1e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G04180 77 / 2e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031787 [exp] 1084 / 0 AT3G03060 985 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028305 [exp] 693 / 0 AT2G18330 920 / 0.0 AAA-type ATPase family protein (.1) Lus10041751 [exp] 687 / 0 AT2G18330 915 / 0.0 AAA-type ATPase family protein (.1) Lus10017405 [exp] 86 / 3e-17 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010204 [exp] 82 / 9e-16 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 81 / 2e-15 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10039309 [exp] 81 / 2e-15 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016124 [exp] 80 / 2e-15 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10024692 [exp] 80 / 3e-15 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143300 [exp] 869 / 0 AT5G16930 896 / 0.0 AAA-type ATPase family protein (.1) Potri.001G458200 [exp] 867 / 0 AT3G03060 910 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G023900 [exp] 676 / 0 AT4G36580 868 / 0.0 AAA-type ATPase family protein (.1) Potri.005G122300 [exp] 177 / 4e-49 AT4G36580 285 / 2e-89 AAA-type ATPase family protein (.1) Potri.007G069800 [exp] 83 / 4e-16 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.013G016800 [exp] 81 / 5e-16 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.001G097600 [exp] 80 / 2e-15 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.005G025100 [exp] 79 / 2e-15 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.015G007700 [exp] 77 / 5e-15 AT4G27680 615 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G093300 [exp] 79 / 6e-15 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12037 [flax] [poplar] DUF3523 Domain of unknown function (DUF3523) CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10031211 pacid=23150974 polypeptide=Lus10031211 locus=Lus10031211.g ID=Lus10031211.BGIv1.0 annot-version=v1.0 ATGGCGAAAACGGCTGCAATCGGGCTAGTCTCCGCCATTGCCGCCGTTACCTCCATCTCTCAATCCACCCCAGTTGCTTACGCCGACGGCCCTTTCAATT TCCCACCCTTCTCCGCCTCTCAGAACGCTGCTCTTCCGCCTCAGCCTTCTCTGCCTTCGTCTTCATTGCCACCATCCGGCGGAGCAGAAGATCTCGCGGC GGCGGTCACGAATAAACCTAGAAATGACAACCCCAGAACTTCGTCTTCTGGATTTGACCCTGAGGCGCTCGAGAGAGGCGCAAAGGCCGTCAAAGACATC GCCTCTTCTTCCCACGCTAAAAAGGTGTTTGAATATCTGAAGACACAGGAAGAAACTAGACAAAAGGAATTCGCTGCAAAAGCAGCCGAGTACAAGGCAT TGCAAGCACAAGCTGAGACTGAGAGGCACAAGGCCGATAATGAGTACCAAAGAGCTAGAAATCAGGAGCTGGTGAAACTTCAAGAGGAATCTTCAGTCAG GCAGGAGCAGGCTCGGCGAGCTACTGAGGAACAGATTCAAGCCCAGCGACGTCAGACGGAGAGGGAGAAGGCTGAGATTGAAAGGGAGACGATTAGGGTG AGGGCTATGGCAGAGGCAGAAGGGCGAGCTCACGAAGCGAAGCTGGCCGAAGATGTTAACAGGAGAATATTGATCGATCGAGCTAATGCTGAACGGGAGA AGTGGGTTTCTGCCATCAATACTACCTTTGAACATATTGGAGGGGGGTTGAAAGCTGTATTGACTGATCAGAACAAGCTCGTTGTTGTGGTTGGCGGCGT GACAGCCCTCGCAGCAGGAACCTATACAACAAGGGAAGGGGCGAAGGTGGTGTGGAGCTATATAGACAGGATACTAGGCCAACCTTCGTTAATCCGGGAG TCATCGAGAGGGAAATATCCTTGGTCCGGAGTTTTCAAACGTGGCTTGAGCACTCTGTCGCGCGATTCTTCTAGCAAAGGCCTCACAGATGGTAACGGCT TTGGAGATGTGATCTTGCATCCTTCTCTTCAGAAAAGAATTCAACAGCTGGCTAATGCAACTGCCAATACGAAATCTCATCAAGCGCCGTTCCGAAACAT GCTCTTCTATGGCCCCCCTGGAACGGGGAAGACCATGGTTGCTAGAGAACTTGCTCGCAAATCTGGATTAGATTATGCATTGATGACCGGTGGTGATGTT GCACCATTAGGATCACAGGCTGTTACAAAGATACACCAATTGTTCGATTGGTCTAAGAAGTCGAAGCGAGGCTTATTGCTATTTATAGACGAGGCAGATG CATTTTTGTGCGAGCGGAATAAGATCTACATGAGCGAAGCACAACGAAGCGCATTGAACGCCCTCCTATTCCGGACCGGCGACCAGTCCAAAGACATAGT GCTAGCCCTTGCAACTAACCGTCCAGGAGATCTCGACTCGGCCGTGGCAGATCGTGTGGACGAGGTCCTCGAATTCCCCTTACCAGGGGAAGACGAACGG TTCAAGCTGCTGAAGCTCTATCTGAACAAGTACATAGCCCAGGCAGGGTCGAGCCAGTCCGGAAACTGGCTCAAGAGGCTGTTTAAGAAGAAGCAGCAGC AGCAGAAGATCGAGATCAAAGGAGTGACGGACGATATCATAAGGGAAGCAGCAGCAAAAACGGAAGGGTTCTCCGGAAGGGAGATTGCGAAACTGATGGC TGGTGTGCAAGCAGCGGTGTACGGAAGCAATGACTGCGTGCTGGACGCGAGCTTGTTCCGCGAAGTTGTGGATTACAAGGTCGCGGAGCACCGGCAGAGG ATCAAACTGGCTTCGGATGGGAAGGGTAATTGA
AA sequence Show only first row Show all	>Lus10031211 pacid=23150974 polypeptide=Lus10031211 locus=Lus10031211.g ID=Lus10031211.BGIv1.0 annot-version=v1.0 MAKTAAIGLVSAIAAVTSISQSTPVAYADGPFNFPPFSASQNAALPPQPSLPSSSLPPSGGAEDLAAAVTNKPRNDNPRTSSSGFDPEALERGAKAVKDI ASSSHAKKVFEYLKTQEETRQKEFAAKAAEYKALQAQAETERHKADNEYQRARNQELVKLQEESSVRQEQARRATEEQIQAQRRQTEREKAEIERETIRV RAMAEAEGRAHEAKLAEDVNRRILIDRANAEREKWVSAINTTFEHIGGGLKAVLTDQNKLVVVVGGVTALAAGTYTTREGAKVVWSYIDRILGQPSLIRE SSRGKYPWSGVFKRGLSTLSRDSSSKGLTDGNGFGDVILHPSLQKRIQQLANATANTKSHQAPFRNMLFYGPPGTGKTMVARELARKSGLDYALMTGGDV APLGSQAVTKIHQLFDWSKKSKRGLLLFIDEADAFLCERNKIYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRVDEVLEFPLPGEDER FKLLKLYLNKYIAQAGSSQSGNWLKRLFKKKQQQQKIEIKGVTDDIIREAAAKTEGFSGREIAKLMAGVQAAVYGSNDCVLDASLFREVVDYKVAEHRQR IKLASDGKGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	0	1
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	1.7	0.9449
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	1.7	0.9522
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	2.8	0.9386
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	3.2	0.9234
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	3.5	0.9456
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	4.5	0.9363
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	6.5	0.9084
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	6.7	0.9252
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	6.9	0.9341
AT5G15810			N2,N2-dimethylguanosine tRNA m...		Lus10005696 [exp]	7.2	0.9058

Compare expression of checked genes

Lus10031211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.