Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53750 813 / 0 RPT1A regulatory particle triple-A 1A (.1) AT1G53780 690 / 0 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G19990 356 / 2e-118 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 355 / 5e-118 RPT6A AAA-type ATPase family protein (.1) AT1G45000 333 / 1e-109 AAA-type ATPase family protein (.1.2) AT5G43010 332 / 2e-109 RPT4A regulatory particle triple-A ATPase 4A (.1) AT4G29040 320 / 4e-104 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 320 / 6e-104 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT3G05530 316 / 8e-103 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT5G58290 314 / 3e-102 RPT3 regulatory particle triple-A ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031815 [exp] 838 / 0 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 358 / 4e-119 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10017972 [exp] 332 / 2e-109 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017475 [exp] 331 / 6e-109 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10028807 [exp] 331 / 1e-108 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041964 [exp] 326 / 9e-107 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10015524 [exp] 316 / 5e-104 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10033055 [exp] 317 / 2e-103 AT5G19990 749 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10029887 [exp] 318 / 3e-103 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216600 [exp] 819 / 0 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 813 / 0 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 810 / 0 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 355 / 6e-118 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 355 / 1e-117 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.002G031400 [exp] 336 / 6e-111 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 333 / 6e-110 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 333 / 6e-110 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 333 / 1e-109 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G025100 [exp] 318 / 2e-103 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10031243 pacid=23151103 polypeptide=Lus10031243 locus=Lus10031243.g ID=Lus10031243.BGIv1.0 annot-version=v1.0 ATGCTTTCGATTACAATTCTAGTGACATCTAATCGAACGAACCAAGAGGTTCAACCAGACGGGCTAATCAACCGACCAGCAAAGGATAATGCAGGCCAAC ATTATAGAGTTTCATATCCGGCCCGAGAGCCAAAACAGGCTAAACAGCTAAAGCCCAGAACAGCTCCGGGTCGGTTCGGCCCATTGATCCTAGGCTGCGT ATTTGTTCCGGGTCGGTTCGACCCAAACAGCTCCAGGTCGTCTTTTGTTGCCGAGGGAGGAAAGGTTTCTTGCACATTCAGTCAGAAGCTCACCGATTCG AAAGCCTTCATATACCACGCTCGATCTACAAAGTACCTTGCGAGCTGCAGAAACCCCCCAAACGGAATGGCTCCCACTGAAGCGGAAGAGTACGATGCAA CGAAGGAAGAGAAGAACCCTCGGCCTCTGGATGAAGATGATATCGCTCTGCTTAAGACATACGGGTTAGGGCCATATTCGAATAGTATTAAGAAGGAGGA GAAGGAAATTAAGGACTTGGCTAAGAAGATTAATGACCTCTGTGGTATCAAGGAATCTGACACTGGTTTGGCTGCACCAAGCCAGTGGGATCTGGTCTCT GATAAGCAGATGATGCAGGAGGAACAACCGCTTCAGGTTGCTCGGTGCACAAAGATTATTAATCCGAATACTGAGGACGCCAAATACGTCATCAATGTCA AACAAATTGCTAAGTTTGTTGTTGGCCTTGGTGACAAAGTATCCCCTACTGATATCGAAGAGGGCATGCGAGTTGGGGTTGATCGTAACAAGTATCAGAT TCAGATTCCATTGCCACCAAAGATCGATCCAAGTGTTACTATGATGACAGTGGAAGAAAAGCCTGATGTAACATACAATGATGTTGGTGGCTGTAAAGAG CAGATTGAGAAGATGCGAGAAGTTGTTGAGCTTCCTATGCTTCACCCTGAGAAATTTGTGAAGCTTGGAATTGATCCTCCCAAAGGTGTTCTATGCTACG GTCCACCTGGAACCGGGAAAACCTTGCTGGCTAGAGCTGTGGCCAACAGAACAGATGCATGTTTCATTCGTGTTATCGGTAGTGAGCTGGTTCAGAAATA TGTTGGAGAAGGAGCTCGCATGGTTAGGGAGCTTTTCCAGATGGCTAGGTCAAAGAAGGCATGCATTGTCTTCTTCGATGAAGTTGATGCCATAGGTGGC GCACGTTTTGATGACGGTGTAGGTGGAGACAACGAAGTCCAGCGGACAATGCTTGAAATCGTCAACCAGCTCGATGGATTTGATGCCAGAGGAAACATCA AAGTTTTGATGGCTACAAACAGACCCGATACCTTGGACCCAGCCCTTCTACGTCCAGGAAGACTGGATCGTAAGGTCGAGTTCGGACTCCCAGATATGGA GAGCAGGACTCAGATTTTCAAGATCCACACACGGACAATGAACTGCGAAAGAGATATTCGTTTTGAACTACTTGCCCGTCTTTGTCCCAATTCAACCGGA GCTGACATCAGGAGTGTGTGCACCGAAGCTGGGATGTATGCTATTCGAGCACGCAGGAAGACAGTGACCGAGAAGGACTTTCTCGATGCAGTGAACAAGG TCATTAAAGGGTATCAGAAGTTCAGTGCCACCCCGAAGTATATGGTCTACAACTAA
AA sequence Show only first row Show all	>Lus10031243 pacid=23151103 polypeptide=Lus10031243 locus=Lus10031243.g ID=Lus10031243.BGIv1.0 annot-version=v1.0 MLSITILVTSNRTNQEVQPDGLINRPAKDNAGQHYRVSYPAREPKQAKQLKPRTAPGRFGPLILGCVFVPGRFDPNSSRSSFVAEGGKVSCTFSQKLTDS KAFIYHARSTKYLASCRNPPNGMAPTEAEEYDATKEEKNPRPLDEDDIALLKTYGLGPYSNSIKKEEKEIKDLAKKINDLCGIKESDTGLAAPSQWDLVS DKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKE QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDMESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG ADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	0	1
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10034299 [exp]	1.7	0.8070
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	4.5	0.6869
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	12.7	0.6890
AT3G09180			unknown protein		Lus10016953 [exp]	15.6	0.7256
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10040534 [exp]	16.8	0.7078
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	17.2	0.7201
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	17.5	0.6656
AT3G57890			Tubulin binding cofactor C dom...		Lus10012025 [exp]	21.4	0.7248
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	24.1	0.6855
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034308 [exp]	25.7	0.6107

Compare expression of checked genes

Lus10031243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.