Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51190 588 / 0 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 568 / 0 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 369 / 5e-121 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G17430 368 / 2e-120 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 335 / 6e-110 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G10510 339 / 3e-109 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 337 / 3e-109 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT4G37750 328 / 2e-105 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G54320 233 / 3e-70 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G16060 215 / 2e-64 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031831 [exp] 712 / 0 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 333 / 1e-109 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 331 / 5e-106 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 329 / 3e-105 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 327 / 4e-105 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 301 / 2e-95 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10036719 [exp] 251 / 8e-77 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 251 / 1e-76 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 238 / 1e-73 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205700 [exp] 669 / 0 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 656 / 0 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 386 / 1e-125 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 382 / 7e-124 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 375 / 6e-123 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.006G167700 [exp] 373 / 1e-122 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.001G169500 [exp] 343 / 7e-111 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.007G011600 [exp] 340 / 1e-110 AT5G10510 510 / 5e-177 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Potri.002G114800 [exp] 342 / 3e-109 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 340 / 2e-108 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10031260 pacid=23151060 polypeptide=Lus10031260 locus=Lus10031260.g ID=Lus10031260.BGIv1.0 annot-version=v1.0 ATGAATTCAAACAACTGGCTCTCATTCCCCCTTTCCCCAACACACGACTCCACAAATCTCAACACTTCTCATCACTCTCACCAGCACTTCTCCCTCGGCT TAGTCAATGACTCCATCGACAACCCTTTCCAACACCAAGGATGGGGGTTAATGAACGGTCAAGGAAGCAATGAAGTCCCGAAAGTTGCGGACTTCCTCGG AGTCAGCAAATCCGACGGCGGCGGCGACAACAGCACCACCAATCATCATCAGACGGCTGATTTCATGGCGTACCATGAAATTCACAACCACCAAGAGGTG AGCGACGCGGCGGAGTATTTGTTTTCCGGCGGCGGTGGTGGTGGGGTCAATAGTCTGATGCCGTTGCAACACGCCGGCGGCGGCGGAGTTATGGCGGCGG CGAGTGATGGGTACGAGTATAGTACGGAGAGTGCAAGTAATTTACAGGCGCTGACGTTGTCGATGGGGAGTGCTAGTGGGAAGAGTGAGACTAGTGGGGA TAATAGTACTAGTACTAATAGTACCGCCGCCGTTGATGCCGCCGGCGCCGCCACTCCGAGGAGGACTTTGGATACGTTTGGTCAACGGACTTCCATTTAT CGCGGCGTCACTAGGCATAGATGGACAGGTAGATACGAAGCTCATCTATGGGACAATAGCTGTAGGAGGGAAGGCCAATCGAGGAAAGGGCGTCAAGTGT ATCTAGGTGGTTATGACAAAGAAGAAAAAGCTGCTAGGGCTTACGACTTGGCTGTTTTAAAGTATTGGGGACCATCCACTACCACTAATTTCCCAATAAG CAACTATGAGAAAGAATTGGAGGAAATGAAGCATATGACTCGCCAGGAATTCGTTGCATCGATTCGAAGGAAGAGCAGTGGCTTCTCTAGGGGTGCATCC ATGTATCGTGGTGTTACAAGGCACCACCAGCATGGAAGATGGCAAGCTAGGATCGGTAGAGTCGCAGGAAACAAAGATCTCTACCTCGGCACCTTCAGCA CAGAGGAGGAAGCAGCGGAAGCGTACGACATAGCGGCAATTAAGTTCAGAGGACTTAACGCCGTTACCAACTTCGACATGAACCGTTACGATGTTAAGAG CATCCTCGAGAGCAACACACTCCCCATCGGCGGCGGGGCCGCCAAACGGCTCAAAGAGGCTCAAGCCTTGGAGTCATCACGCAAGCGTGACGAAATGATC GCTCTCGGCTCGACCTATCCTTACACCACCACCGGCTCGAGCCGGCTTCAAGCCTACTCTCTCATGCAGCAGCAGCCGAGCCCGTACGACCAAGCCCAGC CGCTACTCACTTTGCAAAACGGCCAGGATATCTCCCCATACGGCGCCGCACAGGATGCAACGTCGTCGTTTCATCACAATAATTACTTGCAGACACAGCT CCACTTGGCCCACCAATCAGCTGCCGCCACGTCATACCAGGGAGGTGGATCATCGTCGTCGCAGTTCTACAACAGCTATCTCCAGGGCAACCCCGGGATG CTCCATGGATTGATGAACATGGGATCGGGTTCGACATCGATTATCGATAATAATGGTGGCGGAGGAGGTGGGTATGGTGGCGGTTCGGGGTTTTTAGGTA ACGGGCTGGAGATGGGTACTGGTGGATCGAGTAATCATCAAGTTGGATCGGTCTCGGGCGAGGAAGGTGTAGGTGCGTTGGTTAAGGTTGACTATGACAT GCCATCGACTGGCGGGTACGGTGGTTGGACCGGTGAATCGGTCCCTGGGTCGAACCCGGGCGTGTTCACAATGTGGAATGACTAA
AA sequence Show only first row Show all	>Lus10031260 pacid=23151060 polypeptide=Lus10031260 locus=Lus10031260.g ID=Lus10031260.BGIv1.0 annot-version=v1.0 MNSNNWLSFPLSPTHDSTNLNTSHHSHQHFSLGLVNDSIDNPFQHQGWGLMNGQGSNEVPKVADFLGVSKSDGGGDNSTTNHHQTADFMAYHEIHNHQEV SDAAEYLFSGGGGGGVNSLMPLQHAGGGGVMAAASDGYEYSTESASNLQALTLSMGSASGKSETSGDNSTSTNSTAAVDAAGAATPRRTLDTFGQRTSIY RGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAVLKYWGPSTTTNFPISNYEKELEEMKHMTRQEFVASIRRKSSGFSRGAS MYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQALESSRKRDEMI ALGSTYPYTTTGSSRLQAYSLMQQQPSPYDQAQPLLTLQNGQDISPYGAAQDATSSFHHNNYLQTQLHLAHQSAAATSYQGGGSSSSQFYNSYLQGNPGM LHGLMNMGSGSTSIIDNNGGGGGGYGGGSGFLGNGLEMGTGGSSNHQVGSVSGEEGVGALVKVDYDMPSTGGYGGWTGESVPGSNPGVFTMWND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	0	1
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	1.0	0.9690
					Lus10041915 [exp]	3.5	0.9363
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10009939 [exp]	4.0	0.9324
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	4.6	0.9441
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	4.9	0.9356
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	7.1	0.9230
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	7.1	0.9455
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	8.1	0.9260
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10002841 [exp]	8.5	0.9309
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	11.8	0.9362

Compare expression of checked genes

Lus10031260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.