Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18193 398 / 4e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 383 / 2e-128 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 349 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 343 / 6e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 338 / 2e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 335 / 3e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50930 317 / 1e-101 BCS1 cytochrome BC1 synthesis (.1) AT5G17750 297 / 4e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 283 / 1e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 281 / 9e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037004 [exp] 340 / 2e-111 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 338 / 4e-111 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003213 [exp] 332 / 7e-108 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 331 / 7e-108 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 301 / 8e-98 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10024275 [exp] 297 / 2e-94 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 295 / 5e-93 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10007391 [exp] 283 / 3e-89 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028463 [exp] 275 / 2e-86 AT3G50930 340 / 2e-111 cytochrome BC1 synthesis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020600 [exp] 387 / 1e-129 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 379 / 2e-127 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G119900 [exp] 369 / 1e-122 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020800 [exp] 363 / 3e-120 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G177200 [exp] 331 / 8e-108 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 322 / 2e-104 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 319 / 1e-102 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 317 / 4e-102 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 304 / 4e-98 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G019600 [exp] 297 / 9e-95 AT1G43910 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10031318 pacid=23151024 polypeptide=Lus10031318 locus=Lus10031318.g ID=Lus10031318.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGGTAGCGGCAGCGACTTCAGTCCTGGAAACCCTAACAACCACCGCAGCGACGGTGGCAGCGACCGCGGCGTCCAACCCCCTCACCTTCT ACGCCTCCTTTTCAACCTCTCTAATGGTCTTCCGTAGCATGAAGAGTGAAATCATCCCGGAGCGGCTCGAGGCGTTTGTCGTGGACTGGATCAAGTCGTG GCTCTTCCCTGTCGAATTCGACAACGATGTTGTCACTTTCGTGATCGATGATGACTGGGAAGATCTCGAAAGGAACGACCTCCTCGACGCCGCCAGGGTC TACCTGTCTACCAAGATCGGGGAACAGAACAAGCGGGTCCGAGTCGGGATGTTCCCGAACCATAGGAACGCAACGACCGCGCTGGTGCAGGGCGAGGAGA TCGTCGACGTGTTTGATAAGACCGTCGAGGTGACGTGGCGCCTGGTTCCTAAAGACAACGAGAACAAGGACGCAGGGGAGTACTACGAGCTCCGATTCGA CGCGAAGGACAGGGAGAGAGTGATGAGAGACTACATAGACCACGTGATGAAAGAATACGAGTCAATCAAACAAAAGGAGAAGGTGCTGAAGCTCTACACC CGACCATCCTCCTCATGGAGGGGGAGGGACCTCAGGCACCCGACGACTTTCGACACACTCGCGATGGATTTCGAGCTGAAGCGAAGGATCATCAACGATC TCGACCGGTTCAAGGCCAGGAAGGAGCTCTACGAGAGAGTAGGCAAGGCATGGAAGAGAGGCTATTTGCTGTATGGTCCGCCCGGGACCGGGAAGTCGAG CATGGTTGCCGCCATGGCAAACCACCTCAACTTTGACGTCTATAGCTTGGAGCTCGGTGAGATCTACTCGGACCAAGATCTCCGAAACGCCCTCCTCGGC GTCGGTAACAAATCCATCACCGTCGTCGAGGACATTGACTGCTGCTACGAAGTCCACGATCGGTCCAAGGGTGAGGGAGATGGCAAAAAGGGTAAAGATG GTAAAGGTGGCCGCAAGAAAAAATCACGACATGAGAAGTTCACATTATCAACACTGCTGAACTGCATCGACGGCCTGTGGACGAGCAGGGCGGAGGAGCG AATCGTGATCTTCACGACGAACCACAAGGAGATTCTGGATCCGGCCTTGCTCCGGGCTGGGAGGATGGACATGCACATCAACCTCTACTACTGCAGGACG CAGGCGTTCAGCACTCTGGCCTCCAACTACCTGGGGGTCGAAGGGAGCCACCCTCTGTTTCCGGAGATCGGCGAGCTTCTGGAAGAAGTGGACGTCACTC CTGCGGCCTTGGCGGAAGAGCTGATGAAGGATGAAGGCTGTGATGAAGTTCTGAAGCAGGTGATTGAGTTTCTGAAGGGGAAGAAGGCTGAGAAGAAGAA GGAAGAGGAAACAGAGGAGGTGAAAAAGAAGGAAGAAGCAGAGGAGGTGAAAGAGAACAAGGAAGAAGAAACAGAGGATGTGAAAAAGAAGAAGGAAGAA ACAGAGGATGAACAGAGTGGAAGCAGTAGTGATGATGGTGACGATGATGATGATGATGGGAGCAGCAGTAGTGATTATGAGAGTTAG
AA sequence Show only first row Show all	>Lus10031318 pacid=23151024 polypeptide=Lus10031318 locus=Lus10031318.g ID=Lus10031318.BGIv1.0 annot-version=v1.0 MAAAVAAATSVLETLTTTAATVAATAASNPLTFYASFSTSLMVFRSMKSEIIPERLEAFVVDWIKSWLFPVEFDNDVVTFVIDDDWEDLERNDLLDAARV YLSTKIGEQNKRVRVGMFPNHRNATTALVQGEEIVDVFDKTVEVTWRLVPKDNENKDAGEYYELRFDAKDRERVMRDYIDHVMKEYESIKQKEKVLKLYT RPSSSWRGRDLRHPTTFDTLAMDFELKRRIINDLDRFKARKELYERVGKAWKRGYLLYGPPGTGKSSMVAAMANHLNFDVYSLELGEIYSDQDLRNALLG VGNKSITVVEDIDCCYEVHDRSKGEGDGKKGKDGKGGRKKKSRHEKFTLSTLLNCIDGLWTSRAEERIVIFTTNHKEILDPALLRAGRMDMHINLYYCRT QAFSTLASNYLGVEGSHPLFPEIGELLEEVDVTPAALAEELMKDEGCDEVLKQVIEFLKGKKAEKKKEEETEEVKKKEEAEEVKENKEEETEDVKKKKEE TEDEQSGSSSDDGDDDDDDGSSSSDYES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18193			P-loop containing nucleoside t...		Lus10031318 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004347 [exp]	7.3	0.6520
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	8.1	0.6383
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10016285 [exp]	10.7	0.6257
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	14.1	0.6162
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	17.5	0.6112
					Lus10033096 [exp]	18.9	0.6112
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	20.2	0.6112
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	21.4	0.6112
AT3G44150			unknown protein		Lus10021005 [exp]	22.6	0.6032
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	23.7	0.6024

Compare expression of checked genes

Lus10031318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.