Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18330 179 / 1e-52 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT5G17300 152 / 4e-42 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 130 / 7e-35 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT3G10113 130 / 3e-34 MYB Homeodomain-like superfamily protein (.1) AT2G46830 126 / 2e-31 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G01060 122 / 5e-30 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT3G09600 103 / 7e-25 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT4G01280 102 / 3e-24 MYB Homeodomain-like superfamily protein (.1.2) AT5G52660 101 / 6e-24 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 99 / 2e-23 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031893 [exp] 688 / 0 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10026365 [exp] 330 / 4e-110 AT1G18330 193 / 6e-58 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10042292 [exp] 325 / 3e-108 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10030184 [exp] 126 / 4e-32 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10005134 [exp] 126 / 4e-31 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 123 / 3e-30 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10027521 [exp] 102 / 2e-24 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 103 / 4e-24 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 103 / 7e-24 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030400 [exp] 243 / 1e-75 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.012G038300 [exp] 176 / 7e-50 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 171 / 4e-48 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.017G144800 [exp] 162 / 4e-45 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.014G106800 [exp] 123 / 4e-30 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.002G180800 [exp] 122 / 1e-29 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.006G133000 [exp] 103 / 8e-25 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 102 / 3e-24 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 101 / 7e-24 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 100 / 2e-23 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031322 pacid=23151107 polypeptide=Lus10031322 locus=Lus10031322.g ID=Lus10031322.BGIv1.0 annot-version=v1.0 ATGGAGGCTACTGCTTCTTCTCAGGATCGAATTCAGGAAGCCCGTCGTGATATGTCAGTTTCCGGAGGTGATTACTATGAGGACAACAACGATGGTGAAC AGTTGATGGAGTTGAACTCATCTACGAGTCAGCATCTGCTCAAGGTGAGGAAACCATACACCATAACTAAACAGAGGGAGAAATGGACAGACGAGGAACA CCAGAAGTTCCTTGAAGCTCTGAAGCTGTATGGCCGCGGCTGGCGTAAGATTCAAGAACATGTAGGCACCAAAACTGCCGTACAAATTCGAAGCCATGCT CAGAAGTTCTTCTCCAAGGTGGTCCGCGAGACAACTGGTGGATCAGAGAACTTGATTAAGCCAACCGAGATCCCTCCTCCTCGTCCAAAGAGGAAACCTT TGCATCCTTACCCTCGCAAGTGCACTGATGTCTCGAATCAATTCGAGACATCTCTGTCTCCCTACTTGTTGTCCATGGAGAGGGAAAGCCATTCCCCAAC ATCTCTCTCGACTGTGGTTCTCGAATCTCCAGTTTCAGAGGCCCTAAATAGGAGCTCTTCACTGACCTCATGCACCAGTGATGTCCAATCCTCCAGCTTG CACCCTAATGAGAAGGAGAGCGAACCCATAGGATCAGACTCGCCTCCACCCGGAAACTTGCCTTCATCACGTAGACGCTCATCATCCGGTCCAACAATGG AGAAATTGCCCACAGTAGCGAAAAATGCAGCTTCTGCCAGCACCGTTGCAGTCTTGGCACCTTCCAGGAGCTTCAAGCTGTTTGGAAAGACGGTCTTGGT TACAGATTCCGAGAAGTATGTGGATCTCGAGCTAAACATCAAGCTTTCAATTGGTTTGGTTGACCATGATTCGAGTAACCGGTTGGTATCAACCCAGCAG CACACATCATTCATTGAAGTTAAGAGAGAGATCACCTGCTTCTCAGAAGCTGATTTCTCACTATCACCATATGTGGAGGACGATACAAAACATAAAGAAG CTGTCCACGAGAGGTCTTGCACAGGCTCAGATGCCGGGTCGACAAGTGAAATCGCCACCAGGGAAAGATCGATGGATGTCGGCGAGTCCCAATGCCAACT TCCCTCTTCTAGAGTTGAGCTATCTGGTTCTATGAGCAATACAGCCCGAGGCTTCATGCCATACAAGAGGTGTTTAGCAGATAGGGATATGACATCGTCA CTGGTTGCATCCGAAGAACGAGACCAGCAACGCGCTCGAGTATGCTCTTAG
AA sequence Show only first row Show all	>Lus10031322 pacid=23151107 polypeptide=Lus10031322 locus=Lus10031322.g ID=Lus10031322.BGIv1.0 annot-version=v1.0 MEATASSQDRIQEARRDMSVSGGDYYEDNNDGEQLMELNSSTSQHLLKVRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRKIQEHVGTKTAVQIRSHA QKFFSKVVRETTGGSENLIKPTEIPPPRPKRKPLHPYPRKCTDVSNQFETSLSPYLLSMERESHSPTSLSTVVLESPVSEALNRSSSLTSCTSDVQSSSL HPNEKESEPIGSDSPPPGNLPSSRRRSSSGPTMEKLPTVAKNAASASTVAVLAPSRSFKLFGKTVLVTDSEKYVDLELNIKLSIGLVDHDSSNRLVSTQQ HTSFIEVKREITCFSEADFSLSPYVEDDTKHKEAVHERSCTGSDAGSTSEIATRERSMDVGESQCQLPSSRVELSGSMSNTARGFMPYKRCLADRDMTSS LVASEERDQQRARVCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10031322 [exp]	0	1
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	3.6	0.9405
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	3.9	0.9149
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	6.5	0.9200
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10013962 [exp]	8.2	0.9181
					Lus10012525 [exp]	8.7	0.8947
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	9.8	0.9102
AT2G28080			UDP-Glycosyltransferase superf...		Lus10021439 [exp]	10.2	0.9019
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	12.5	0.9183
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10036773 [exp]	13.6	0.8720
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	16.2	0.8919

Compare expression of checked genes

Lus10031322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.