Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17950 206 / 6e-65 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G73410 196 / 3e-61 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT1G69560 184 / 2e-55 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 179 / 3e-54 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT4G33450 176 / 1e-53 MYB ATMYB69 myb domain protein 69 (.1) AT5G17800 179 / 2e-53 MYB ATMYB56 myb domain protein 56 (.1) AT3G29020 171 / 1e-51 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G39700 132 / 5e-37 MYB ATMYB89 myb domain protein 89 (.1) AT3G55730 134 / 7e-36 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 132 / 3e-35 MYB ATMYB1 myb domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031900 [exp] 479 / 5e-171 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10029746 [exp] 192 / 1e-58 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10018936 [exp] 189 / 1e-57 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10028638 [exp] 188 / 2e-57 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10030452 [exp] 186 / 7e-56 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10026611 [exp] 186 / 1e-55 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 184 / 1e-55 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10028250 [exp] 141 / 2e-38 AT3G55730 306 / 2e-101 myb domain protein 109 (.1) Lus10040239 [exp] 140 / 5e-38 AT3G55730 315 / 1e-104 myb domain protein 109 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G033600 [exp] 216 / 6e-69 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.012G039400 [exp] 211 / 5e-67 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.007G134500 [exp] 194 / 1e-60 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.017G017600 [exp] 190 / 7e-59 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.010G167500 [exp] 189 / 4e-56 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.017G085200 [exp] 187 / 9e-56 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.005G186400 [exp] 184 / 1e-55 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.007G106100 [exp] 183 / 1e-55 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.008G088000 [exp] 187 / 2e-55 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.002G073500 [exp] 179 / 1e-53 AT1G17950 202 / 9e-64 myb domain protein 52 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031326 pacid=23151043 polypeptide=Lus10031326 locus=Lus10031326.g ID=Lus10031326.BGIv1.0 annot-version=v1.0 ATGTGTAGCAGAGGGCACTGGAGGCCGGCGGAGGATGAGAAGCTGAAGGAGTTGGTCGAACGTTACGGCCCACATAACTGGAACGCCATCGCCGATAAGC TCCATGGCCGATCCGGAAAGAGTTGTAGGTTGAGATGGTACAATCAGCTCGATCCGAGGATCAACCGGACCCCCTTCACCGACGAAGAAGAGGAGCGGCT CATTGCGTCCCACCGCATCCACGGGAATCGATGGGCCGTCATCGCCCGTCTCTTCCCCGGGCGGACGGACAACGCGGTCAAGAACCACTGGCATGTCATG ATGGCCAGGCGCTGTCGCGAGCGCTCCAAATCATCGTCGTCAGGACCATCATCAGTTCATCGCAATAACTCTAGTTGTATTGCCACCAACATGGCTGCAG ACCCCAGGATTACTGCAGGGTCTACAGCCATGCTGAACATGATGAAGTCCTCATCATCTTCTAGTCATGGTGGCGTTGCGAACTACCTCCAACCGGGTTA TCGTCCTTTCTACTATGGTAACCGCCAACAAGATCAGGCGACTGCGAAATCGCTTCAGCAGCTGGCGGCTTCGTATGTGATGAACAAGTGTTTCAATATG TTTGATGCTAAGAAGACAACGACACAGACAACGACACGTCGTTTTCATCCGTACCATCCCCATCCTCATCCTCATTATCTCTTCCCCAAAGACTACTACC TTATGACACAATCTCATAATCTCCTTCATCAAGAAAATGAAAAGGAGGAGAAAGGTCCTATAGAGTACTACGATTTTCTCCAAGTACACAACAACAACGA GAACTCGAACAAAAGCGAAGTTATAGATAAAACACCCGATCACCTACCACAACCGGGAGACGAGGAAGAAGAGGAGGAGGAGGAAGATGAAGAGGTAGAT CAAGACGACAATGATCAGTCGAAACTAGAGGGCCATGACACGTTACCAACGATCAAAGAAGAGAGCGATAAGGTGATCGGGTTCATCGATTTTCTAGACG TGGGAACAACAAGGAGAGCAAACCCTAGCTAG
AA sequence Show only first row Show all	>Lus10031326 pacid=23151043 polypeptide=Lus10031326 locus=Lus10031326.g ID=Lus10031326.BGIv1.0 annot-version=v1.0 MCSRGHWRPAEDEKLKELVERYGPHNWNAIADKLHGRSGKSCRLRWYNQLDPRINRTPFTDEEEERLIASHRIHGNRWAVIARLFPGRTDNAVKNHWHVM MARRCRERSKSSSSGPSSVHRNNSSCIATNMAADPRITAGSTAMLNMMKSSSSSSHGGVANYLQPGYRPFYYGNRQQDQATAKSLQQLAASYVMNKCFNM FDAKKTTTQTTTRRFHPYHPHPHPHYLFPKDYYLMTQSHNLLHQENEKEEKGPIEYYDFLQVHNNNENSNKSEVIDKTPDHLPQPGDEEEEEEEEDEEVD QDDNDQSKLEGHDTLPTIKEESDKVIGFIDFLDVGTTRRANPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031326 [exp]	0	1
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	1.0	0.9685
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010107 [exp]	6.6	0.9430
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	7.9	0.9673
AT3G09410			Pectinacetylesterase family pr...		Lus10024398 [exp]	8.1	0.9200
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	8.8	0.9591
AT1G22030			unknown protein		Lus10019943 [exp]	9.4	0.9624
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	9.5	0.9663
AT1G35830			VQ motif-containing protein (....		Lus10006941 [exp]	11.5	0.9437
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	12.0	0.9595
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	12.7	0.9412

Compare expression of checked genes

Lus10031326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.