Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06470 253 / 5e-81 Nucleotide/sugar transporter family protein (.1.2) AT5G11230 43 / 0.0003 Nucleotide-sugar transporter family protein (.1) AT2G25520 42 / 0.0003 Drug/metabolite transporter superfamily protein (.1) AT5G25400 42 / 0.0003 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010954 [exp] 390 / 9e-135 AT1G06470 554 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10018339 [exp] 45 / 5e-05 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002023 [exp] 44 / 0.0001 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 42 / 0.0004 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G278700 [exp] 257 / 1e-82 AT1G06470 542 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Potri.006G252500 [exp] 45 / 3e-05 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.018G028900 [exp] 44 / 7e-05 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10031370 pacid=23155818 polypeptide=Lus10031370 locus=Lus10031370.g ID=Lus10031370.BGIv1.0 annot-version=v1.0 ATGTCAGTGAATGGTTCTAGCAATGTGTACGATGACGAGGGTGATGCACTGGGACATGGAATTGAGAAAGAAAAACTCACGGCCATGGAAATTGAAAATG GGTTACCTTTCAAGGAACACTTATCGGATCCAGGGGACGATGGATCAGATTCTTTGAGCAACATTGAAATAGTGTCCCCGAAATCCAAGAGTCCTTATTC AGCTGTTGACGTGTTGAAGACCTTGTTTTTCATCCTTGTATGGTACACGTTCAGTACATTTCTAACCTTGTATAATAAAACTCTTTTAGGAGATCATCTG GGGAGATTTCCAGCTCCACTATTGATGAATGCCTTCCATTTTGGAATGCAAGCTGTTATGTCAACGTTCATCACGTGGTATTGGTCGCACAGATTTGAAA CGACTGTTGCTATGTCATGGAGAGATTATTTTGTTAGAGTTGTACCAACTGCTCTGGGGACAGCAATGGATGTCAACCTGAGCAATGCATCCCTTGTTTT CATTTCCGTTACCTTTGCTACAATGTGTAAATCTGCGGCACCTATATTCCTTATTCTGTTTGCATTTGCATTCAGGTATCCACTTTCACTTATTGCAGTA TATGATTACTTTCTGTGCACCTTCCCTTTTCCTCTTGCCAATCTGAATCTTAGTTCTGTGGCAAGAGAAACAGAATTTGAGTTTTGGGGTTTTGTATTCG TTATGCTTGCTGCTGTTATGTCGGGATTTCGCTGGTCCATGACACAAATTCTTTTGCAGGTCTTAACTGAATATATTCTTATTTCAGTAACAAGTGCTGT TACTGTAACAATAGCCGGTGTCGTCAAGGAGGCAGTTACTATTGTGGTGGCTGTATTTTATTTCCATGACAAGTTTACCTGGCTAAAAGGAGTTGGTCTT CTGATCATCATGGTTGGTGTTGGTCTATTCAACTGGTATAAATATGAAAAGCTGCAAAAAAGAGAAACCAGTGAAGATGACTCGGGTAGATCCTCTACCG AAAACATCCCCCCAAAATATGTCATCCTCGAAGAGGCAGACGATCAAGAAGATGGAACTTAA
AA sequence Show only first row Show all	>Lus10031370 pacid=23155818 polypeptide=Lus10031370 locus=Lus10031370.g ID=Lus10031370.BGIv1.0 annot-version=v1.0 MSVNGSSNVYDDEGDALGHGIEKEKLTAMEIENGLPFKEHLSDPGDDGSDSLSNIEIVSPKSKSPYSAVDVLKTLFFILVWYTFSTFLTLYNKTLLGDHL GRFPAPLLMNAFHFGMQAVMSTFITWYWSHRFETTVAMSWRDYFVRVVPTALGTAMDVNLSNASLVFISVTFATMCKSAAPIFLILFAFAFRYPLSLIAV YDYFLCTFPFPLANLNLSSVARETEFEFWGFVFVMLAAVMSGFRWSMTQILLQVLTEYILISVTSAVTVTIAGVVKEAVTIVVAVFYFHDKFTWLKGVGL LIIMVGVGLFNWYKYEKLQKRETSEDDSGRSSTENIPPKYVILEEADDQEDGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	0	1
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	2.2	0.8785
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	2.4	0.8585
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	4.2	0.8217
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	5.7	0.7976
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10027138 [exp]	6.7	0.8480
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	8.5	0.8067
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	10.2	0.8423
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10003393 [exp]	11.0	0.8265
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	12.4	0.8078
					Lus10026092 [exp]	14.5	0.8197

Compare expression of checked genes

Lus10031370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.