Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50700 367 / 1e-126 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 367 / 1e-126 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50770 293 / 6e-98 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47350 273 / 2e-90 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 255 / 2e-83 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT4G10020 256 / 2e-82 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G50690 249 / 4e-81 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 249 / 4e-81 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT5G65205 102 / 4e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 100 / 5e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001511 [exp] 651 / 0 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 528 / 0 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10043187 [exp] 514 / 0 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10016748 [exp] 343 / 1e-115 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10022441 [exp] 337 / 3e-115 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10022442 [exp] 262 / 4e-86 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10041045 [exp] 231 / 5e-73 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10006178 [exp] 222 / 8e-70 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 216 / 4e-67 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100000 [exp] 308 / 3e-104 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 305 / 4e-103 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 300 / 3e-101 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G102000 [exp] 283 / 2e-94 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048900 [exp] 278 / 5e-92 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 277 / 8e-92 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.019G073200 [exp] 241 / 2e-77 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.013G100200 [exp] 237 / 6e-76 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.007G086600 [exp] 96 / 2e-22 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 85 / 1e-18 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10031448 pacid=23155956 polypeptide=Lus10031448 locus=Lus10031448.g ID=Lus10031448.BGIv1.0 annot-version=v1.0 ATGGATCTGATTCACATGTTCCTCAACTTGGTAGCTCCACCCTTCACGTTCTTCTCACTGTGTTTCCTCCTCCCTCCTTACCTTCTCCTCAAGGCTTTCA CCTCTGCGGTGTCGTTTTTCTTCTGCGAGAATGTCTCCGGCAAGGTCGTCCTCATCACCGGCGCCTCCTCCGGCATCGGCGAGCATTTGGCTTATGAGTA TGCGAGCAAAGGGGCATTTCTGGCACTGGCGGCACGCAGAGATAAAGGGCTCAGAGAAGTAGGCGACCTCGCCGTCGAATTAGGATCTCCAGAAGTGATT ACCATCGTCGGAGATGTCCAGAACGTGAACGACTGCCGAAGAATCGTTCATGAAACAGTCAATCATTTCGGCAGATTGGATCACTTGGTGAACAATGCCG GAGTCGGTTCGGTCAGCTACTTCGAAAACGTCAAGGATATCACCAGCTTCCGAACCATTATGGACACCAACTTCTGGGGATCGGCTTACATGACCAAATT CGCAATTCCGCACCTGAGAGAGACGGCTGGCAAGATCGTTGCTATTGCCTCCGCAGCTTCATGGCTTCCTGAACCCATGACCAGCATCTACAATGCAAGC AAAGCAGCAACTGTGGCCATGTTCGAAACCTTAAGGGTGGAGCTAAGCCCGGACATCGGGGTCCTGATAGTCACCCCAGGTTACATCGAGTCCGAACTTA CAACGGGGAAGTTCTTAACTCCCGAAGGCAGGATGGACGTCGACCACGAATTGCGAGATGCGAAAGTGGGTCCGATGCCAATATTATCTGTGGAAGCCAC CACCAAGGCGATCGTTAAGAGTGCATGCAGAGGGGATAAGTACCTGACGGTTCCAGGGTGGGTGAGGACTTCATGGCTGTGGAAGATCTTTTGCCCGGAC GCCGTCGAGTTGTTTTACCGCTCGTTGTTCACTGCCGGTAGTGGCGGTGGCTACGAAACAGAGGCGCCCAGCAAGAGTGTGCTGGATGTGACTGGTGCTC AGAGATTGCTGTACCCTGATTCTGTCCAGAACCATTATGACTAA
AA sequence Show only first row Show all	>Lus10031448 pacid=23155956 polypeptide=Lus10031448 locus=Lus10031448.g ID=Lus10031448.BGIv1.0 annot-version=v1.0 MDLIHMFLNLVAPPFTFFSLCFLLPPYLLLKAFTSAVSFFFCENVSGKVVLITGASSGIGEHLAYEYASKGAFLALAARRDKGLREVGDLAVELGSPEVI TIVGDVQNVNDCRRIVHETVNHFGRLDHLVNNAGVGSVSYFENVKDITSFRTIMDTNFWGSAYMTKFAIPHLRETAGKIVAIASAASWLPEPMTSIYNAS KAATVAMFETLRVELSPDIGVLIVTPGYIESELTTGKFLTPEGRMDVDHELRDAKVGPMPILSVEATTKAIVKSACRGDKYLTVPGWVRTSWLWKIFCPD AVELFYRSLFTAGSGGGYETEAPSKSVLDVTGAQRLLYPDSVQNHYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10031448 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10013762 [exp]	2.2	0.9312
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10030800 [exp]	2.4	0.9008
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027937 [exp]	3.0	0.8345
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026013 [exp]	3.5	0.8751
AT1G16445			S-adenosyl-L-methionine-depend...		Lus10031751 [exp]	5.2	0.7690
					Lus10010102 [exp]	6.3	0.8687
					Lus10000289 [exp]	10.3	0.7123
					Lus10008514 [exp]	12.0	0.7648
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	13.2	0.8933
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	22.4	0.8097

Compare expression of checked genes

Lus10031448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.