Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15210 86 / 2e-20 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28360 84 / 7e-20 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G53170 83 / 2e-19 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G03800 84 / 3e-19 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT1G28370 82 / 3e-19 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G50640 81 / 3e-18 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT5G44210 79 / 1e-17 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G20310 77 / 9e-17 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G12980 77 / 2e-16 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G43160 72 / 2e-15 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035329 [exp] 109 / 1e-28 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10029987 [exp] 87 / 2e-21 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10033664 [exp] 85 / 4e-20 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10039857 [exp] 80 / 4e-18 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10015415 [exp] 79 / 2e-17 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10035129 [exp] 73 / 2e-15 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10043182 [exp] 72 / 3e-15 AT3G20310 111 / 6e-30 ethylene response factor 7 (.1) Lus10014054 [exp] 71 / 1e-14 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10005805 [exp] 70 / 7e-14 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356100 [exp] 101 / 3e-26 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1) Potri.011G056900 [exp] 84 / 8e-20 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047500 [exp] 83 / 1e-19 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.017G013700 [exp] 81 / 2e-18 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G397200 [exp] 81 / 2e-18 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.007G138100 [exp] 80 / 4e-18 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.004G047600 [exp] 79 / 1e-17 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G057000 [exp] 78 / 3e-17 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.002G043300 [exp] 77 / 3e-17 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G115600 [exp] 77 / 4e-17 AT3G15210 92 / 7e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10031526 pacid=23155905 polypeptide=Lus10031526 locus=Lus10031526.g ID=Lus10031526.BGIv1.0 annot-version=v1.0 ATGCGTCGACCGAGGAAGCCTGCCGTCGTCGCTGCAGCTGCTTCCCAGAAGCAGATCGGCGGGCCTCAGGCGGAGGAGATCAAGTACCGAGGCGTCAGGA AGCGGCCATGGGGCAGATTCGCCGCGGAGATCAGGGATCCATGGAAGAAGACTCGCGTCTGGCTGGGAACCTTCGACTCGGCCGAGGACGCAGCCAGGGC TTACGACGCCGCGGTCATCTCCTTCCGCGGAGCCAGGGCGAAGACGAACTTGACCTCCCGTTTGCTTGAGGGGCCGCTGGCGGTGGAGCGGCAGGCGTGG ACGACGGCCGCAGAGGAGGAGGAGATGGCGATGGCGGAGGTTCAGGTGGTGAATCGATCTACGAGCTGCGGGATGAGCAGTACGGTGGAGTCGTCGAGCG GCCATCGGGCAGCGGTTTCCATCAATCAGGCGCATCAGCAGCAGCGGCGACGTCGGCCGTTGGTGGTGGTTATCCCCCCGGATGATTGTGGCAGCGACAG TGATTTGTCTTCCACGATCGACGACGAAGAAAACAACGGTGGAGTGACCGATGCTGGATCTAAATCTCATCAGCAATCGAATGAGTCTACCTCAGCAAAG CTGCTCCCGTTCGATTTGAACTTCCCACCTCCGATTGACGAAAACGACCTCGTCGGATTCAGCGGCGAGGAACTCCCCACGTTGGCCTTGTGTCTGTAA
AA sequence Show only first row Show all	>Lus10031526 pacid=23155905 polypeptide=Lus10031526 locus=Lus10031526.g ID=Lus10031526.BGIv1.0 annot-version=v1.0 MRRPRKPAVVAAAASQKQIGGPQAEEIKYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAVISFRGARAKTNLTSRLLEGPLAVERQAW TTAAEEEEMAMAEVQVVNRSTSCGMSSTVESSSGHRAAVSINQAHQQQRRRRPLVVVIPPDDCGSDSDLSSTIDDEENNGGVTDAGSKSHQQSNESTSAK LLPFDLNFPPPIDENDLVGFSGEELPTLALCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	0	1
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	2.2	0.8881
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	3.7	0.8528
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	5.3	0.8053
AT5G13970			unknown protein		Lus10035116 [exp]	5.5	0.8311
AT5G49610			F-box family protein (.1)		Lus10037802 [exp]	6.6	0.8143
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10028319 [exp]	7.5	0.8285
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	7.5	0.8486
AT3G57910			D111/G-patch domain-containing...		Lus10023819 [exp]	10.4	0.7679
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	10.6	0.7788
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	12.2	0.8350

Compare expression of checked genes

Lus10031526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.