Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28110 179 / 4e-55 MYB ATMYB41 myb domain protein 41 (.1) AT1G34670 178 / 6e-54 MYB ATMYB93 myb domain protein 93 (.1) AT5G60890 173 / 7e-53 MYB AtMYB34, MYB34, ATR1 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) AT4G21440 175 / 9e-53 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G15310 172 / 3e-52 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G65230 171 / 8e-52 MYB ATMYB53 myb domain protein 53 (.1) AT3G02940 171 / 1e-51 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 171 / 1e-51 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G01140 172 / 3e-51 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT2G31180 166 / 1e-50 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033738 [exp] 377 / 4e-133 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10039735 [exp] 250 / 2e-83 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10039734 [exp] 223 / 2e-73 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10039771 [exp] 182 / 4e-57 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10018546 [exp] 177 / 3e-55 AT1G34670 176 / 2e-53 myb domain protein 93 (.1) Lus10022021 [exp] 175 / 1e-54 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10018547 [exp] 176 / 2e-54 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10042561 [exp] 172 / 2e-53 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10039772 [exp] 173 / 3e-53 AT4G21440 175 / 5e-53 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149200 [exp] 211 / 6e-68 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 202 / 2e-64 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G149100 [exp] 186 / 4e-58 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.019G118700 [exp] 180 / 8e-56 AT5G16770 170 / 4e-51 myb domain protein 9 (.1.2) Potri.019G118800 [exp] 178 / 6e-55 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.011G125900 [exp] 179 / 2e-54 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G038500 [exp] 176 / 5e-54 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.007G093900 [exp] 177 / 9e-54 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G224100 [exp] 175 / 1e-53 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.019G118200 [exp] 177 / 2e-53 AT4G05100 278 / 7e-92 myb domain protein 74 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031607 pacid=23155954 polypeptide=Lus10031607 locus=Lus10031607.g ID=Lus10031607.BGIv1.0 annot-version=v1.0 ATGGTTCGAACTCCTTCGTGCGACGAGAACGGAATGAGGAAAGGAACTTGGACTGCCGAGGAAGACAGGAAGCTCATTGCCTACATCACTCGCTACGGCT GCTGGAATTGGCGCCAATTGCCCAAATTCGCAGGATTGAAGAGATGCGGGAAGAGTTGTAGGTTGAGATGGATGAATTATCTGAGACCGGATCTCAAACG AGGAAATTACAGTCTCGAAGAGGAAGAAACCGTCATTCGTCTCCATGCAGCCCTCGGAAACAGATGGTCGGTGATAGCTACACATCTTCATGGGAGGAGC GACAACGAGATAAAGAACCACTGGCACAGCAGTCTCAAGAAGCGTGCGACCGGGAAGTCGCAGAGCCCGGCTAGTAGTAGCAGTACTCAATCTAGTGAGT ATAGTGAAGTGAAAGAAGAGGGACTTGACAAGCCCCAAATGGAAATACCGGATGGTGTGGCGGTATTGGAGAGCAGTAATTTGTCGATTTTTTCGCCTGT TGCCACTCTACCGTCGCCCCAAAGTGATGCCATGTCTTCCTCTTCTCCTTTTTCGCCGTCGTTGTTCTCATTTGACAATGTGGCAGCCTCTTCAGCAGGA TGCTCAGATGTGCTATCCTATCTGAGCTCATTCGTTGGCATGTGGGAGACTAACGAAGCGTACAATAATTGGCCGGAGCCGGAATCGGAGCCAATGGTGA CGACTGATAACTATTGGTACATGCCTAGCGAGGTTTTCGAGAGTTTGACGGTCGAGGAGGAGCTCCAATTCCCTTTGTTTTATTGA
AA sequence Show only first row Show all	>Lus10031607 pacid=23155954 polypeptide=Lus10031607 locus=Lus10031607.g ID=Lus10031607.BGIv1.0 annot-version=v1.0 MVRTPSCDENGMRKGTWTAEEDRKLIAYITRYGCWNWRQLPKFAGLKRCGKSCRLRWMNYLRPDLKRGNYSLEEEETVIRLHAALGNRWSVIATHLHGRS DNEIKNHWHSSLKKRATGKSQSPASSSSTQSSEYSEVKEEGLDKPQMEIPDGVAVLESSNLSIFSPVATLPSPQSDAMSSSSPFSPSLFSFDNVAASSAG CSDVLSYLSSFVGMWETNEAYNNWPEPESEPMVTTDNYWYMPSEVFESLTVEEELQFPLFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	0	1
AT1G53903			Protein of unknown function (D...		Lus10003939 [exp]	1.4	0.9893
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	2.0	0.9904
AT3G14880			unknown protein		Lus10013711 [exp]	7.7	0.9890
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007564 [exp]	7.7	0.9366
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	8.2	0.9866
AT5G60330			unknown protein		Lus10018274 [exp]	8.4	0.9876
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	9.4	0.9881
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	10.2	0.9878
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	10.5	0.9409
					Lus10038463 [exp]	11.5	0.9877

Compare expression of checked genes

Lus10031607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.