Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 171 / 5e-51 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 145 / 2e-41 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 135 / 1e-37 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 135 / 3e-37 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G17785 125 / 1e-33 MYB ATMYB39 myb domain protein 39 (.1) AT3G02940 124 / 2e-33 MYB ATMYB107 myb domain protein 107 (.1) AT5G54230 122 / 1e-32 MYB ATMYB49 myb domain protein 49 (.1) AT1G34670 121 / 5e-32 MYB ATMYB93 myb domain protein 93 (.1) AT4G34990 117 / 3e-31 MYB ATMYB32 myb domain protein 32 (.1) AT2G16720 117 / 6e-31 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033735 [exp] 421 / 4e-149 AT4G21440 174 / 2e-51 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018525 [exp] 241 / 9e-80 AT4G21440 218 / 1e-69 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 187 / 2e-58 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 147 / 9e-42 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 148 / 3e-41 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 145 / 3e-41 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 143 / 2e-40 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10040139 [exp] 116 / 3e-31 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10033473 [exp] 116 / 6e-31 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118200 [exp] 169 / 4e-50 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.013G148600 [exp] 160 / 8e-47 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.001G408700 [exp] 151 / 2e-43 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 144 / 8e-41 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 144 / 3e-40 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 142 / 8e-40 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 122 / 2e-32 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.007G093900 [exp] 122 / 3e-32 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.009G134000 [exp] 118 / 1e-31 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.004G174400 [exp] 118 / 2e-31 AT4G38620 305 / 2e-104 myb domain protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031609 pacid=23155779 polypeptide=Lus10031609 locus=Lus10031609.g ID=Lus10031609.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCACCTTGTTGCGAGAAGAACAATGGATCGTTGAAGAAAGGTCCTTGGACGACTGAAGAAGATGACAAGCTCACTTCCTACGTTCATCTTC ATGGCCCTGGAAACTGGCGCAATCTCCCCAAAAATGCTGGTACAAATGCTCCATCTCTACTTGTAGTCATGTGGTCCGCTATAGCCGCTCGATTACCTGG AAGAACAGATAACGAAATAAAGAACTACCGGAACACTCACATTCGTAAAAAACTTTTAAGTAATGGAATCGACCCGGTCACTCACGCTCCTCGACTCGAC CTGCTCGATTTCTCAGCCATACTAGGCTCGCTCAGCCACATCAACCCGGCCGCCTCTCTCCTGACCCTCCTTGCCGCCGGCCAGACACATCAACCATCGC CGCCGTCCCTCAACCCGGAGCTCCTCCGCCTCGCTGCCGCCGCGTTGGGATCACAAGTTCCGATGAACGTCCTAGCCGATCCAACGACGTCGTCCCAGCA ACAAGAGAACGTTTGCGGGTTTCAGGAGTTGGATAATAGTTATGACATGGGCAATACGCAGCGTATCGCGTCGTCCAATCTTCAGGAGGATAATTTGGTT TCGGTACCTGATGAATTTGGTAATTGGAATACCGTCCCTGAACTTTCCGATAATTGCCAAAGTTACTTCCAATCTACGACAGCGAGTGAGAATAGGAATG GGGGGAATGTTGGGAACGTTGGATCCTCCGTTATGTCGACGCCGTTGTCGAGCCCGGGGCGGTTTGTGAACGGCGGCCGCTGGAGCTCTAATACGACGAC GAATCAGGAGTACAACCATAGCTTGTTTAAGTTTGAGATTCCGGAGAGTTTAGTGTCGTTTGATGATTTCATGTAA
AA sequence Show only first row Show all	>Lus10031609 pacid=23155779 polypeptide=Lus10031609 locus=Lus10031609.g ID=Lus10031609.BGIv1.0 annot-version=v1.0 MGRAPCCEKNNGSLKKGPWTTEEDDKLTSYVHLHGPGNWRNLPKNAGTNAPSLLVVMWSAIAARLPGRTDNEIKNYRNTHIRKKLLSNGIDPVTHAPRLD LLDFSAILGSLSHINPAASLLTLLAAGQTHQPSPPSLNPELLRLAAAALGSQVPMNVLADPTTSSQQQENVCGFQELDNSYDMGNTQRIASSNLQEDNLV SVPDEFGNWNTVPELSDNCQSYFQSTTASENRNGGNVGNVGSSVMSTPLSSPGRFVNGGRWSSNTTTNQEYNHSLFKFEIPESLVSFDDFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10031609 [exp]	0	1
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	5.0	0.9043
					Lus10011553 [exp]	8.1	0.9022
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10015515 [exp]	11.5	0.8859
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042612 [exp]	14.1	0.8980
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	15.5	0.8780
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10033473 [exp]	17.3	0.8910
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	18.9	0.9019
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	20.6	0.8489
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	23.7	0.8705
AT3G05725			Protein of unknown function (D...		Lus10010929 [exp]	27.9	0.8003

Compare expression of checked genes

Lus10031609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.