Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52020 149 / 1e-45 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G12630 117 / 2e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 96 / 3e-25 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G51990 96 / 1e-24 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25490 93 / 1e-23 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G11590 93 / 1e-23 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 93 / 3e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G32800 92 / 3e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 89 / 2e-22 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT4G25480 88 / 6e-22 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031655 [exp] 201 / 3e-66 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10027413 [exp] 196 / 2e-64 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10031656 [exp] 177 / 4e-57 AT5G52020 148 / 5e-45 Integrase-type DNA-binding superfamily protein (.1) Lus10027415 [exp] 164 / 1e-52 AT5G52020 78 / 2e-18 Integrase-type DNA-binding superfamily protein (.1) Lus10017830 [exp] 123 / 3e-35 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10024492 [exp] 122 / 1e-34 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10031654 [exp] 102 / 1e-27 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10014376 [exp] 100 / 3e-26 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10006332 [exp] 100 / 4e-26 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121200 [exp] 146 / 4e-45 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 148 / 6e-45 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110500 [exp] 144 / 5e-44 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134000 [exp] 137 / 3e-40 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 116 / 6e-33 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 115 / 2e-32 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 103 / 1e-27 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 100 / 2e-26 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.019G075600 [exp] 98 / 4e-26 AT1G33760 147 / 6e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136400 [exp] 97 / 4e-25 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10031652 pacid=23180780 polypeptide=Lus10031652 locus=Lus10031652.g ID=Lus10031652.BGIv1.0 annot-version=v1.0 ATGGCAGCCAACGACTCCCCACCTCCTCCATATCCTAACTACCAACAACCTCCGCCGTCATCCAGGTACAAAGGGGTCCGGATCCGGAGCGGGAAATGGG TGTCGGAGATCCGAGAACCCAAGAAGACGACCCGGATTTGGCTGGGGACTTACCCTACCCCTGAAATGGCTGCGGCAGCGTACGACGTCGCAGCGATCGC TCTCAAAGGTCCCAACACTACTCTCAACTTCCCTGAATCTTTCCGCTCTTACCCTACCCCGGCTTCCAACTCGCCCTCCGACATCCGGGCAGCTGCCCTC ATACCTTCGAAGCCTGCCCAGTTTGGGCAGGCTTCGGGGTCTTCCACTTCTCGCCCAGCCGAGGATTATATGGACGTGGAGGACATGCTGGACATGCCGA ATTTGCTGGTGGATATGGCCGGCGGGATGATGGTCAGCCCTCCAAGGATGGACAATACGGCGTCGTATGGGGATTCCCCGGATAATTCGCAGGGTGATTC TCTGTGGTCGTACGACGACAAGTGA
AA sequence Show only first row Show all	>Lus10031652 pacid=23180780 polypeptide=Lus10031652 locus=Lus10031652.g ID=Lus10031652.BGIv1.0 annot-version=v1.0 MAANDSPPPPYPNYQQPPPSSRYKGVRIRSGKWVSEIREPKKTTRIWLGTYPTPEMAAAAYDVAAIALKGPNTTLNFPESFRSYPTPASNSPSDIRAAAL IPSKPAQFGQASGSSTSRPAEDYMDVEDMLDMPNLLVDMAGGMMVSPPRMDNTASYGDSPDNSQGDSLWSYDDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031652 [exp]	0	1
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027415 [exp]	5.8	0.8128
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10015279 [exp]	9.3	0.8298
					Lus10038478 [exp]	16.3	0.8015
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012610 [exp]	26.7	0.7949
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	27.4	0.8067
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	30.5	0.8061
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	32.1	0.7998
AT5G14890			NHL domain-containing protein ...		Lus10001932 [exp]	38.5	0.6763
AT4G33040			Thioredoxin superfamily protei...		Lus10024982 [exp]	43.5	0.7994
					Lus10020194 [exp]	45.2	0.7900

Compare expression of checked genes

Lus10031652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.