Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25490 172 / 2e-54 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25470 170 / 7e-54 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25480 170 / 1e-53 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT5G51990 167 / 2e-52 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT1G12610 140 / 4e-42 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT1G63030 139 / 4e-42 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT2G36450 105 / 5e-29 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G52020 95 / 3e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G32800 86 / 5e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 86 / 9e-21 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027414 [exp] 263 / 9e-91 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027412 [exp] 191 / 9e-62 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10031657 [exp] 182 / 2e-58 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10006332 [exp] 153 / 6e-47 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10017829 [exp] 151 / 9e-47 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10029601 [exp] 152 / 3e-46 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10019455 [exp] 151 / 4e-46 AT5G51990 236 / 1e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10006334 [exp] 151 / 6e-46 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10001871 [exp] 150 / 6e-46 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134100 [exp] 203 / 4e-66 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 182 / 4e-58 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 171 / 2e-53 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.001G110700 [exp] 166 / 7e-52 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110500 [exp] 110 / 6e-31 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 110 / 3e-30 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 106 / 7e-29 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G121200 [exp] 105 / 1e-28 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.009G147700 [exp] 104 / 3e-27 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.015G136300 [exp] 91 / 1e-22 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10031654 pacid=23180775 polypeptide=Lus10031654 locus=Lus10031654.g ID=Lus10031654.BGIv1.0 annot-version=v1.0 ATGGACGAGGAGGTGAAGTTGGCCGCCGCAAGGTTTCCGAAAAGGCCAGCTGGCCGGAAGAAGTTCAGGGAGACACGTCACCCGGTGTACCACGGAGTCC GGCGGCGGGGGGAGTCTGGCGGGAAGTGGGTGTCCGAGGTCCGGGAGCCGAAGAAGAAGACGAGGATATGGCTGGGAACTTTCCCCACTGCTGAAATGGC TGCGCGGGCTCATGACGTGGCGGCTCTGGCTTTGAGGGGGAGTTCGGCTTGCTTGAACTATGCTGACTCGGGTTGGCGGCTTCCGGTTCCGGAGTCGGCG GATAGTAAGGGGATTCAGAAGGCGGCGGCTGAGGCCGCGGGGGGGTTTCGACCGATGGATCGGACGGCGGAAGGGGAAAAGGTGGTTTATATGGATGAGG AGGATGTGTTTGAGATGCCGGGGATTTTGGCGAGCATGGCGGAAGGGATGCTGTTGTCACCGCCGCCGCCGGTTTGGGAGGACAGCGTGGGAAAATATGA TGATGACATGGCAGCTGATGTGTCGTTGTGGAGTTACTCGATTTGA
AA sequence Show only first row Show all	>Lus10031654 pacid=23180775 polypeptide=Lus10031654 locus=Lus10031654.g ID=Lus10031654.BGIv1.0 annot-version=v1.0 MDEEVKLAAARFPKRPAGRKKFRETRHPVYHGVRRRGESGGKWVSEVREPKKKTRIWLGTFPTAEMAARAHDVAALALRGSSACLNYADSGWRLPVPESA DSKGIQKAAAEAAGGFRPMDRTAEGEKVVYMDEEDVFEMPGILASMAEGMLLSPPPPVWEDSVGKYDDDMAADVSLWSYSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Lus10031654 [exp]	0	1
AT5G58610			PHD finger transcription facto...		Lus10007741 [exp]	3.5	0.7426
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10036637 [exp]	8.4	0.7627
AT2G36895			unknown protein		Lus10001393 [exp]	16.7	0.6820
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10041217 [exp]	18.7	0.5989
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	19.7	0.7110
AT2G04790			unknown protein		Lus10012354 [exp]	21.0	0.7563
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	23.7	0.7264
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	32.0	0.7057
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10041969 [exp]	57.0	0.5262
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	79.8	0.6574

Compare expression of checked genes

Lus10031654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.