Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12630 128 / 2e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G52020 119 / 1e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 101 / 4e-27 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G51990 96 / 1e-24 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25490 88 / 1e-21 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25470 85 / 1e-20 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT5G11590 82 / 2e-19 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 82 / 3e-19 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 82 / 8e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G60490 81 / 1e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027413 [exp] 217 / 2e-72 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10031652 [exp] 191 / 2e-62 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10031656 [exp] 164 / 6e-52 AT5G52020 148 / 5e-45 Integrase-type DNA-binding superfamily protein (.1) Lus10017830 [exp] 111 / 1e-30 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10027415 [exp] 108 / 1e-30 AT5G52020 78 / 2e-18 Integrase-type DNA-binding superfamily protein (.1) Lus10024492 [exp] 108 / 1e-29 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10014376 [exp] 102 / 4e-27 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10031657 [exp] 96 / 3e-24 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10027412 [exp] 94 / 8e-24 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121200 [exp] 141 / 7e-43 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110500 [exp] 139 / 6e-42 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 139 / 2e-41 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134000 [exp] 133 / 1e-38 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 112 / 3e-31 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 109 / 4e-30 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 99 / 3e-25 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 92 / 4e-23 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 89 / 1e-21 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.019G075600 [exp] 86 / 4e-21 AT1G33760 147 / 6e-45 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10031655 pacid=23180719 polypeptide=Lus10031655 locus=Lus10031655.g ID=Lus10031655.BGIv1.0 annot-version=v1.0 ATGGCCGCCAACAAACCTGACCCTCCTCCTCCTCCACAACCCACCCAGCCGCCGCCGCCCTCGTCTTCAACTCCCTCGATGTACAGAGGGGTCCGGATCC GGAGCGGGAAATGGGTGTCGGAGATCCGAGAACCCAAGAAAACGAGCCGGATTTGGCTGGGGACCTATCCTACCCCTGAAATGGCTGCGGCAGCATACAA CGTCGCAGCGATAGCCCTCAAGGGTCGTGAAACTCCCCTCAATTTTCCTGCCTCTATCGGCTCTTACCCTACCCCGGCGTCAACCTCTGCTTCTGACATC CGGGCAGCTGCCCACACTGCTGCAGCCGCCTTTGTGGCCCCGAAGTCTGCCCATGGGCAGGCTTCGGGGGAGGGCTCGATGAGAAATCCGGAGGAGTATA TGGATGTGGAAGACATCCTGGACATGCCGAATCTGCTGGTGGAAATGGCGGGAGGGATGATGGTCAGCCCTCCTAGGATGGGGGATACGGCGTCGTATGG TGATTCTCCGGATAACTCGGAGGGCGAATCTTTGTGGTCGTATGATAAGTGA
AA sequence Show only first row Show all	>Lus10031655 pacid=23180719 polypeptide=Lus10031655 locus=Lus10031655.g ID=Lus10031655.BGIv1.0 annot-version=v1.0 MAANKPDPPPPPQPTQPPPPSSSTPSMYRGVRIRSGKWVSEIREPKKTSRIWLGTYPTPEMAAAAYNVAAIALKGRETPLNFPASIGSYPTPASTSASDI RAAAHTAAAAFVAPKSAHGQASGEGSMRNPEEYMDVEDILDMPNLLVEMAGGMMVSPPRMGDTASYGDSPDNSEGESLWSYDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031655 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	8.9	0.7830
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	9.4	0.7721
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	10.5	0.7398
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10020863 [exp]	23.5	0.7095
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10004141 [exp]	27.5	0.7070
					Lus10026314 [exp]	31.3	0.7232
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011816 [exp]	32.5	0.7020
AT4G01200			Calcium-dependent lipid-bindin...		Lus10002155 [exp]	34.8	0.7262
					Lus10024338 [exp]	36.1	0.6982
AT5G58900	MYB		Homeodomain-like transcription...		Lus10018209 [exp]	37.0	0.6799

Compare expression of checked genes

Lus10031655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.