Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52020 114 / 1e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G12630 94 / 4e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 83 / 4e-20 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT4G16750 82 / 2e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G11590 81 / 1e-18 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 80 / 1e-18 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 81 / 3e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 78 / 3e-18 AP2_ERF ATERF38 ERF family protein 38 (.1) AT4G32800 79 / 4e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G25480 77 / 2e-17 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031652 [exp] 159 / 5e-50 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10027413 [exp] 155 / 2e-48 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10031655 [exp] 154 / 6e-48 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10017830 [exp] 98 / 2e-25 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10024492 [exp] 96 / 1e-24 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10027415 [exp] 88 / 1e-22 AT5G52020 78 / 2e-18 Integrase-type DNA-binding superfamily protein (.1) Lus10023873 [exp] 83 / 3e-20 AT2G36450 121 / 3e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10014376 [exp] 84 / 4e-20 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 81 / 7e-19 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121200 [exp] 131 / 6e-39 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 127 / 1e-36 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110500 [exp] 123 / 1e-35 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134000 [exp] 122 / 3e-34 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 96 / 9e-25 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 95 / 3e-24 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 84 / 8e-20 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110700 [exp] 83 / 1e-19 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G155700 [exp] 83 / 2e-19 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 81 / 1e-18 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10031656 pacid=23180652 polypeptide=Lus10031656 locus=Lus10031656.g ID=Lus10031656.BGIv1.0 annot-version=v1.0 ATGGCAGCCAACCAACCTCAAGACAATGCTCCTCCTCCTTCTCCAACCCAACAACAATCGCCGCCGTCCATCAGAAAGCAACCAAAGTACAGAGGAATCC GTAGCCGGAGCGGGAAATGGGTGTCGGAGATCCGAGAACCCAAAAAAACGACCCGAATATGGCTTGGCACTTACCCAACCCCGGAAAAGGCTGCCGCAGC ATACGACGTCGCAGCAATCGCCCTCAAGGGTCCCCACACCCCTCTAAACTTCCCAACCTCCTTCTACTCTTACCCTATCCCGGCCACTACCTCCCCTTCC GACATCCGCTCTGCAGCAGCTCGTGCGGCTGCTCAAATCCAAGCATCCTCCTCGCAGGGCCCGGTGGTCCGGGCCCAGGAGGAGGAGTACGTGGACATGG AGGACATGGAGGACATGCTGAACATGCCGAACTTGCTATTAGAAATGGCGGGAGGCATGATGGTTAGCCCGCCAAGGATGCACGATACCGCACCCTATGG AGATTCTCCTGAAAATTCGGAGGGCGAATCCGTGTGGTCGTATCGACAGTTTTGA
AA sequence Show only first row Show all	>Lus10031656 pacid=23180652 polypeptide=Lus10031656 locus=Lus10031656.g ID=Lus10031656.BGIv1.0 annot-version=v1.0 MAANQPQDNAPPPSPTQQQSPPSIRKQPKYRGIRSRSGKWVSEIREPKKTTRIWLGTYPTPEKAAAAYDVAAIALKGPHTPLNFPTSFYSYPIPATTSPS DIRSAAARAAAQIQASSSQGPVVRAQEEEYVDMEDMEDMLNMPNLLLEMAGGMMVSPPRMHDTAPYGDSPENSEGESVWSYRQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031656 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10033782 [exp]	3.2	0.8124
AT4G10265			Wound-responsive family protei...		Lus10039761 [exp]	6.5	0.7746
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	16.4	0.7728
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10020848 [exp]	17.4	0.7959
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	18.3	0.7463
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	20.7	0.7680
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	21.3	0.7541
					Lus10021406 [exp]	23.8	0.7533
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	25.3	0.7481
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10023856 [exp]	25.6	0.7532

Compare expression of checked genes

Lus10031656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.