Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51990 195 / 1e-62 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25470 180 / 8e-57 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25490 175 / 5e-55 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25480 172 / 8e-54 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT1G63030 147 / 2e-44 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT1G12610 140 / 2e-41 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 94 / 2e-23 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G52020 93 / 5e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G11590 92 / 2e-22 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 90 / 8e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027412 [exp] 307 / 9e-107 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10019455 [exp] 191 / 6e-61 AT5G51990 236 / 1e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10031654 [exp] 182 / 5e-58 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027414 [exp] 180 / 3e-57 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10001871 [exp] 158 / 4e-48 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 158 / 6e-48 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029601 [exp] 151 / 2e-45 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006332 [exp] 151 / 2e-45 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10024491 [exp] 144 / 9e-43 AT4G25480 187 / 6e-60 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134100 [exp] 198 / 2e-63 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 188 / 2e-59 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 172 / 2e-53 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.001G110700 [exp] 167 / 1e-51 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.009G147700 [exp] 118 / 4e-32 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.004G187001 [exp] 105 / 6e-27 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.006G021000 [exp] 98 / 5e-25 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 95 / 8e-24 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G121200 [exp] 91 / 1e-22 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 92 / 2e-22 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10031657 pacid=23180619 polypeptide=Lus10031657 locus=Lus10031657.g ID=Lus10031657.BGIv1.0 annot-version=v1.0 ATGGATCAGCAGCTCTCCCATATCGCCGGGCAGTCCGACGAGGGAAGCTCGGCGGCGGCGGCGGCGGCAGAAGGGATGACTTTGGCTTCGAACTGCCCGA AGAAGCGGGCGGGAAGGAAGAAGTTCACGGAGACGCGTCATCCAATCTACCGGGGAGTCCGACAACGAAGCACCGGGAAATGGGTCTGCGAAGTCCGGGA GCCCAACAAGAAGTCCCGGATCTGGCTGGGTACTTTCCCCACCGTCGAGATGGCGGCGCGTGCCCACGACGTTGCGGCTTTAGCCCTCAGAGGGAAGTCG GCTTGCTTGAACTTCACCGACTCTGCTACCCGGCTCCGTATCCCTGAATCGGCGGATACAAAGGAGATTCAGAGGGCAGCCGCTGAAGCGGCTGAGCTGT TCCGTCCGCCGGAAGTTGTTTATGGTCAGGAATCTAGCGTGACACCACCGGCGGTGGAAGCGACGACGGCGGCGGAAACAACAACGGTGGAGGAAGGACG GGATCCAGATGTTGATGATGATTTCCGTCCATTCTACATGGATGAGGATGATGTGTTCGGGATGCCGGGGCTTTTGACGAGCATCGCGGAAGGGATGATG CTGCCGCCGCCGATGGACAGCCTGGGAAGTTATGGTAATGATGATGACATGGCAGGTGATTTTGCTGATGTGTCGCTGTGGAGTTACTCGTTTTGA
AA sequence Show only first row Show all	>Lus10031657 pacid=23180619 polypeptide=Lus10031657 locus=Lus10031657.g ID=Lus10031657.BGIv1.0 annot-version=v1.0 MDQQLSHIAGQSDEGSSAAAAAAEGMTLASNCPKKRAGRKKFTETRHPIYRGVRQRSTGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGKS ACLNFTDSATRLRIPESADTKEIQRAAAEAAELFRPPEVVYGQESSVTPPAVEATTAAETTTVEEGRDPDVDDDFRPFYMDEDDVFGMPGLLTSIAEGMM LPPPMDSLGSYGNDDDMAGDFADVSLWSYSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10031657 [exp]	0	1
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10034197 [exp]	2.2	0.8499
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030453 [exp]	11.1	0.8339
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10014375 [exp]	14.5	0.7869
AT5G10960			Polynucleotidyl transferase, r...		Lus10029710 [exp]	14.8	0.7244
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10001871 [exp]	16.6	0.8392
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006332 [exp]	20.0	0.8373
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	21.0	0.8307
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	22.6	0.8201
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	26.6	0.7836
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	32.7	0.8038

Compare expression of checked genes

Lus10031657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.