Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25240 897 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 862 / 0 SKS2 SKU5 similar 2 (.1) AT4G12420 784 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT5G48450 664 / 0 SKS3 SKU5 similar 3 (.1) AT4G22010 506 / 4e-175 SKS4 SKU5 similar 4 (.1) AT1G21850 505 / 1e-174 SKS8 SKU5 similar 8 (.1) AT1G55570 491 / 5e-169 SKS12 SKU5 similar 12 (.1) AT1G21860 489 / 8e-169 SKS7 SKU5 similar 7 (.1) AT3G13400 489 / 2e-168 SKS13 SKU5 similar 13 (.1) AT1G55560 486 / 4e-167 SKS14 SKU5 similar 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031143 [exp] 1113 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 919 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 910 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10028921 [exp] 795 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 791 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 785 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 780 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10025860 [exp] 708 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 696 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127200 [exp] 932 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.012G126400 [exp] 923 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.003G112700 [exp] 804 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 798 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.014G177700 [exp] 699 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.004G180500 [exp] 519 / 3e-180 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G021000 [exp] 517 / 2e-179 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.014G154500 [exp] 507 / 1e-175 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.002G227600 [exp] 506 / 5e-175 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 504 / 2e-174 AT5G66920 822 / 0.0 SKU5 similar 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10031722 pacid=23180578 polypeptide=Lus10031722 locus=Lus10031722.g ID=Lus10031722.BGIv1.0 annot-version=v1.0 ATGACAGTGGCTATGGTTCTTCTTCGCTCATCTCTTCTCGCTTTGATCTGCATTGCTCTGTTTTCTCACCGTTGCTTCGCCGCCGACCCGACCGTTTCGT ATGAGTTCAAGCTCAGTTACATCACCGCCTCTCCTCTCGGCGTTCCTCAGCAGGTGATTGCTGTGAATGGACAGTTTCCTGGCCCTCTCCTGAATGCTAC GACTAACTACAATGTTATTGTTAACGTCGTTAATCATTTGGATGAAGGCCTTCTCATAACTTGGCCAGGGATTCAAATGCGACGGAACTCGTGGGAGGAT GGAGTCCGTGGCACGAACTGTCCGATTCGACCAAAGAGGAACTTCACCCACACATTCCAAGTGAAGGATCAGATCGGCAGCTTCTTCTACTACCCATCAC TTAAACTCCAGAGAGCAGCTGGAGGGTTTGGTCCTATCATTATTAACAATAGGAATGTGATCGCTATCCCTTTCGCACAGCCTGATGGTGACATTATTGT CTTGATTGGTGACTGGTACACGAAGAGCCACTTGGCATTGAGGATGGCTCTTGATTCTGGTAAAGAACTTGGAATGCCTGATGGAGTTCTGATTAATGGG AAAGGACCCTTTAAGTACAATTCTAGTGTACCTGATGGTATCACGTACGAAACCTTTAACGTTGATCCAGGAAGAACTTACAGATTTCGGGTGCACAATG TTGGCTCTTCGACTAGCTTAAACTTCAGGATTCAAGGCCACAATCTGCTTCTGGTCGAGACTGAGGGACATTACACAGTACAACAAAACTACACCAGTTT TGATATTCATGTGGGCCAGTCTTACTCGTTTCTGGTCACCATGGATCAGAATGCAACTAGTGACTACTACATTGTGGCAAGTGCCCGGTATGTTAACGAG TCAGTTTGGCAAAGGGTTACTGGTGTTGCGATCTTGCACTATTCTAACTCACAGGGTCCAGCCACCGGTCCTTTGCCTGATGCTCCAAGTGACATTTACA ACCAATGGTCAGCCATGAGCCAGCCCAAATCTATCAGGCAAAATACAACAGCAAGTGGAGCTAGACCAAATCCACAGGGCTCATTTCACTACGGTTCGAT AAACGTGACTGACACATATATTCTAAGGAGCTTGCCACCAGTTTCAATCAACGGAAAGCAACGCGCAACCCTGAACGGAATCTCTTTTCAAAACCCTGAT ACACCCATCAGGCTTGCAGATGTTCATAAGGTGAAGGGAGCTTACAAGCTCGATTTCCCCAATCAACCTTTGAACAGGCGTCCTGTGATCGATACATCAG TCATAAACGCAACATATAAAGGGTTCATTGAGATCATACTGCAGAACAACGACACGAAACTGCAGAGCTTCCACATGGATGGCTACTCATTCTTTGTTGT TGGGATGGATTGGGGGATCTGGTCAGAGAGCAAAAGGGACTCATACAACAAATGGGATGCCATTTCGCGGTCAACCGTAGAGGTGTATCCCGGTGGATGG ACAGCAGTGTATGCATCTCTGGACAATACAGGAGTGTGGAATCTGAGAGTAGAGAATCTAGACAGGTGGTATCTCGGCCAGGAAACGTACATGAAAGTCG TTAACCCGGAGGAGAATGGCGAAACCGAGATGGGTCCACCTGACAATGTAGTATTCTGTGGTGCACTCCAGAGATTGGAGGAGTAA
AA sequence Show only first row Show all	>Lus10031722 pacid=23180578 polypeptide=Lus10031722 locus=Lus10031722.g ID=Lus10031722.BGIv1.0 annot-version=v1.0 MTVAMVLLRSSLLALICIALFSHRCFAADPTVSYEFKLSYITASPLGVPQQVIAVNGQFPGPLLNATTNYNVIVNVVNHLDEGLLITWPGIQMRRNSWED GVRGTNCPIRPKRNFTHTFQVKDQIGSFFYYPSLKLQRAAGGFGPIIINNRNVIAIPFAQPDGDIIVLIGDWYTKSHLALRMALDSGKELGMPDGVLING KGPFKYNSSVPDGITYETFNVDPGRTYRFRVHNVGSSTSLNFRIQGHNLLLVETEGHYTVQQNYTSFDIHVGQSYSFLVTMDQNATSDYYIVASARYVNE SVWQRVTGVAILHYSNSQGPATGPLPDAPSDIYNQWSAMSQPKSIRQNTTASGARPNPQGSFHYGSINVTDTYILRSLPPVSINGKQRATLNGISFQNPD TPIRLADVHKVKGAYKLDFPNQPLNRRPVIDTSVINATYKGFIEIILQNNDTKLQSFHMDGYSFFVVGMDWGIWSESKRDSYNKWDAISRSTVEVYPGGW TAVYASLDNTGVWNLRVENLDRWYLGQETYMKVVNPEENGETEMGPPDNVVFCGALQRLEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031722 [exp]	0	1
AT5G38880			unknown protein		Lus10005085 [exp]	5.1	0.8701
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	6.7	0.8718
AT5G13520			peptidase M1 family protein (....		Lus10040362 [exp]	7.3	0.8242
AT5G48660			B-cell receptor-associated pro...		Lus10022777 [exp]	8.0	0.8382
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	9.4	0.8631
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	13.4	0.8561
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	15.3	0.8634
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	19.9	0.8509
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	25.0	0.8461
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	27.3	0.8206

Compare expression of checked genes

Lus10031722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.