Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79560 1304 / 0 EMB36, EMB156, EMB1047, FTSH12 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) AT5G42270 279 / 2e-81 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 279 / 3e-81 FTSH1 FTSH protease 1 (.1) AT5G15250 237 / 2e-66 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 236 / 4e-66 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 232 / 1e-64 FTSH8 FTSH protease 8 (.1) AT2G26140 216 / 6e-59 FTSH4 FTSH protease 4 (.1) AT5G53170 211 / 1e-56 FTSH11 FTSH protease 11 (.1) AT4G23940 189 / 3e-49 FtsH extracellular protease family (.1) AT5G58870 186 / 2e-48 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031169 [exp] 1863 / 0 AT1G79560 1356 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10012277 [exp] 274 / 8e-82 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 277 / 2e-80 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 276 / 4e-80 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 235 / 8e-66 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 235 / 5e-65 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10034572 [exp] 229 / 1e-64 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10039334 [exp] 207 / 1e-55 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 207 / 1e-55 AT5G53170 1090 / 0.0 FTSH protease 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171300 [exp] 1424 / 0 AT1G79560 1563 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Potri.002G012000 [exp] 277 / 9e-81 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 275 / 1e-79 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 251 / 1e-71 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 237 / 3e-66 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 234 / 2e-65 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.006G227700 [exp] 224 / 9e-62 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 208 / 9e-56 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 204 / 2e-54 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.002G220366 [exp] 173 / 2e-48 AT1G06430 405 / 1e-138 FTSH protease 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10031745 pacid=23180781 polypeptide=Lus10031745 locus=Lus10031745.g ID=Lus10031745.BGIv1.0 annot-version=v1.0 ATGAACTCGACGACGGTTCTTCACAAACCCAATCCACTCTTCCAATCCTCAAATCTACCAGTTCTCCGAAGACCTTCTTTCATTCCCCCGCGCACTAACA TTTCCAGGACTGTTCGTAAGAGAACAGTTCCAGTGATAAGTTATTCTTCTTCCACAGGAAATGCAAATGGGCCGCCGGACGGAGTGTCCTGGAGTAATCT GTCGCGATCGTTTCGGCTTGTTTCTGAGAGGTTTTATGTGAGGTTGAGAGAGTCGGTGAAGAAGGAAACCGGGATTGACTTCAGTAAGGGCGAAGCTCAG CTCACTCGCTTTAGCACCGAATTTTTGAATTGGAACAAGTTGGAGCGTTGGAAGGATCTCAAGAATTGGGAGCCTAAACGAGTCGCTGCGTTGATTCTCT ATGCATTCGTGGTCATCTTCTCTTTTCAAAGGATGTATGTTGCTGTTCGAGCTCCTTACCTTGATCGACAGAAGAAAGAAGCAACAGAAGCTTTCATGGA GTCTTTGATTCCTGAACCATCTCCCGCTAACATTCGAAAGTTTAAGAAGGTTCTATGGAAGAAAACGTTACCAAAGGGCATGAAGATGAAGAAATTTATC AAAGGGCCTGATGGAACCCTTATTCGTGATACCTCTTATGTTGGAGAAGATGCATGGAATGATGATGCAGTGTCGCCTGAAGAAAATTTGAAGCAAATTA TTGAAAAGGATAACAGACTGAATGCAGAAGAGAAGAAGGAACTGGAGGAAGATCTAGGAATCTCAGGAAGTAAGGAGCAGGAAACTGCTGGATCATGGAA TAGGAGGCTCCAATTATGGCAGGAACTACTGAACAAGGATAAACTAGCTGAAGAGTTGGGTGCTTCAAGTGCCAAGTACGCTTTGGATTTTGACATGAAG GAGGTCGAAAATAGTCTTCGGAAAGATATGGTGAAAAAATTATCAGACAGCAATGGTGCTGCAGCTCTGTGGATATCTAAGAGATGGTGGAAATATCGTC CAACACTTCCCTATACTTACTTTCTTCAAAAGCTTGATTCCTCTGAGGCAATAACTGTTCGACCAAGTGCATATCTGGCTTCTTGTGAGCTTTTGTTTTC TTCCTCGCAGGTTGCAGCAGTTGTCTTCGCAGAAGATTTGAAAAGGGTCTATGTAACTATGAAAGAAGGTTTTCCTTTGGAGTATGTTGTTAATATCCCC CTCGATCCTTATTTGTTTGAGATTATCTCTACTTCTGGAGTCGAAGTCGACCTTCTTCAGAAACGGCAGATTCATTACTTCTTGAAACTTGTGATTGCCT TGCTTCCTGGACTGCTCCTCCTGTCTATCATAGGGGAGTTGACGAGACTGTTACGTGAATCTTCAAAACGTTTTCTGAGAAAGAAGTATAGTCAACTTTT TGACATGGCTTATTCGGAGAATCTTATTGTGCCAGCTAGGAATTTAGATGTTGGCGACACAAAATCAAGGTACAAGGATGTGGTGCTTGGTGGAGATGTC TGGGATCTGCTTAATGAAATAACTATATATATGCGTAATCCCATGCAATATTATGAAAAAGGGGTGAAATTTGTTAGGGGTATTCTTCTGTCGGGACCTC CTGGAACAGGGAAAACCCTCTTTGCACGGACACTCTCAAAGGAAGGTGGACTGCCTTTTGTTTTCGCTTCTGGTGCAGAGTTCACTGACAGTGAGAAGAG CGGCGCTGCGAGGATCAATCAAATGTTTACTCTTGCTAGGAAAAACGCTCCATCATTTGTGTTTATTGACGAAATTGATGCTATTGCTGGAAAGCAAGCA CTAAGGGACACGGGAAGAAGACCAACTTATGAGGCTTTGATTGCACAACTTGATGGAGAGAAAGAGCAAACAGGAGTGGATCGCTTTTCTCTCAAACAAG CTGTGATTTTCATCTGTGCGACCAATAGGCCAGATGAATTAGACTCGGAATTTGTTCGCAAGGGGCGCATAGACCGTCGTTTGTACGTTGGTTTGCCTGA TGCACCCCAACGAGTGCAGATTTTCAGTGTGCATAGTGCCGGAAAGCAACTTGCAGAAGATGTAGACTTTAAAAAGCTTGTGTTCCGTACTACTGGGTTC TCTGGAGCAGACATTCGAAATCTTGTGAATGAAGCAGCTATCATGTCTGTCAGGAAAGGGCATTCCAAGGTTTATCAGGAAGACATTGTTGATGTGTTGG ATAAACAATTGCTCGAGGGCATGGGCGTGCTTCTGACTAAAGAGGCGCAGCAAAAATGCGAAGAAAATGTCCCGTTGGAGAAGAGGAGACTTTTGGCTGT ACATGAAGCTGGACACATAGTCTTATCTCACTTGTTCCCTCGCTTTGATTGGCATGCCTTTTCTCAGCTTCTACCAGGTGGCAAGGAAACTGCACTAACT GTGTTCTACCCAAGGGAAGAAACGATTGACCAAGGTTATACTACATTCGGCTACATGAAGATGCAAATGGTGGTGTCTCATGGAGGGCGTTGTGCTGAAC GTCTAGTGTTTGGCGATGTTACTGATGGTGGAAGCGACGATCTCGAGAAGATAACGAAGCTTGCTAGAGAGATGGTGATCAGCCCCCAAAATGCAAAGCT GGGGCTCACTGCTTTAACGAAAAGACTGGGAATCAAAGAGCGACCCGATAGCTCAGATGACGGAACGATGAAGTACAGGTGGGACGACCCTTTCGTGATC CCTGTCAATATGACGGTTGAAGAATCGGAGCTATTCACTCGCGAGATGACCAGGTACATTGAAGAAACAGAGGAACTTGCCATGAAAGGGTTGAGAGACA ACATGGAGTTGCTTGACATAATTGCTAAAGAACTCTTGGAGACGACGAGGATAACTGGATTGGAGGTTGAGAAGATGATGGAAGGACTTTCTCCAGTGAT GTTTGAGGACATTGCTAAGCCATTCCAGATAAGCCCAAATGAGAACGAAGAATCGCCACGCAGAGACAAGTTGAGATACCAACCACTCGATATATATCCA GCACCGCTTCATCGATGTTAG
AA sequence Show only first row Show all	>Lus10031745 pacid=23180781 polypeptide=Lus10031745 locus=Lus10031745.g ID=Lus10031745.BGIv1.0 annot-version=v1.0 MNSTTVLHKPNPLFQSSNLPVLRRPSFIPPRTNISRTVRKRTVPVISYSSSTGNANGPPDGVSWSNLSRSFRLVSERFYVRLRESVKKETGIDFSKGEAQ LTRFSTEFLNWNKLERWKDLKNWEPKRVAALILYAFVVIFSFQRMYVAVRAPYLDRQKKEATEAFMESLIPEPSPANIRKFKKVLWKKTLPKGMKMKKFI KGPDGTLIRDTSYVGEDAWNDDAVSPEENLKQIIEKDNRLNAEEKKELEEDLGISGSKEQETAGSWNRRLQLWQELLNKDKLAEELGASSAKYALDFDMK EVENSLRKDMVKKLSDSNGAAALWISKRWWKYRPTLPYTYFLQKLDSSEAITVRPSAYLASCELLFSSSQVAAVVFAEDLKRVYVTMKEGFPLEYVVNIP LDPYLFEIISTSGVEVDLLQKRQIHYFLKLVIALLPGLLLLSIIGELTRLLRESSKRFLRKKYSQLFDMAYSENLIVPARNLDVGDTKSRYKDVVLGGDV WDLLNEITIYMRNPMQYYEKGVKFVRGILLSGPPGTGKTLFARTLSKEGGLPFVFASGAEFTDSEKSGAARINQMFTLARKNAPSFVFIDEIDAIAGKQA LRDTGRRPTYEALIAQLDGEKEQTGVDRFSLKQAVIFICATNRPDELDSEFVRKGRIDRRLYVGLPDAPQRVQIFSVHSAGKQLAEDVDFKKLVFRTTGF SGADIRNLVNEAAIMSVRKGHSKVYQEDIVDVLDKQLLEGMGVLLTKEAQQKCEENVPLEKRRLLAVHEAGHIVLSHLFPRFDWHAFSQLLPGGKETALT VFYPREETIDQGYTTFGYMKMQMVVSHGGRCAERLVFGDVTDGGSDDLEKITKLAREMVISPQNAKLGLTALTKRLGIKERPDSSDDGTMKYRWDDPFVI PVNMTVEESELFTREMTRYIEETEELAMKGLRDNMELLDIIAKELLETTRITGLEVEKMMEGLSPVMFEDIAKPFQISPNENEESPRRDKLRYQPLDIYP APLHRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	0	1
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	1.0	0.9548
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	2.6	0.9039
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	3.0	0.9139
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	3.2	0.9165
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	3.9	0.9047
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	4.2	0.9046
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10014211 [exp]	5.8	0.8714
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	6.0	0.9068
AT5G01590			unknown protein		Lus10022672 [exp]	6.0	0.8920
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	6.6	0.8879

Compare expression of checked genes

Lus10031745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.