Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12800 394 / 5e-139 SDRB, DECR short-chain dehydrogenase-reductase B (.1) AT2G07640 201 / 5e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G36580 76 / 3e-16 unknown protein AT2G29260 71 / 5e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 70 / 2e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 68 / 5e-13 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT1G63380 63 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29370 62 / 4e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G54870 63 / 5e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 62 / 5e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031170 [exp] 497 / 2e-179 AT3G12800 454 / 8e-163 short-chain dehydrogenase-reductase B (.1) Lus10018323 [exp] 368 / 2e-128 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10017129 [exp] 364 / 4e-127 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10020019 [exp] 78 / 2e-16 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10036980 [exp] 75 / 3e-15 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015542 [exp] 70 / 2e-13 AT4G05530 385 / 2e-136 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10004984 [exp] 69 / 3e-13 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029370 [exp] 68 / 5e-13 AT4G03140 217 / 3e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001430 [exp] 68 / 6e-13 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G025400 [exp] 411 / 1e-145 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.012G125900 [exp] 397 / 3e-140 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.005G039500 [exp] 76 / 8e-16 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 71 / 4e-14 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 71 / 9e-14 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 70 / 2e-13 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G092400 [exp] 68 / 2e-13 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 67 / 1e-12 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G023900 [exp] 67 / 2e-12 AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 66 / 3e-12 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10031746 pacid=23180716 polypeptide=Lus10031746 locus=Lus10031746.g ID=Lus10031746.BGIv1.0 annot-version=v1.0 ATGAGTTCTTCTCCTTCTCCGTTCAAGCAAGATATACTGAAAGGGAAGGTGGGATTGATAACAGGAGGAGGATCGGGAATTGGATTTGAGATATCTACCC AGTTGGGCAAGCATGGAGCTTCAATTGCGATCATGGGTCGCCGGAGGTCCGTTCTTGACGCCGCCGTCGCCAGTCTCCGATCCCAAGGAATTCAAGCTGT AGGTTTTGAAGGGGATGTTCGAAAGCCTGAGGATGCCAAAAGAGTAATTGAATCAACTTTCCAACACTTGGGAAGGATTGACATCCTTATAAACGCTGCA GCTGGCAATTTCCTTGCCTCTCCCGAGGATTTGTCCCCTAATGGCTTCCGAACAGTTATAGATATTGATGCCGTGGGAACTTTCACAATGTGTCATGCTG CACTCAACTATCTAAAGAAAGGAGGGCTCGGTCGAGATTCTTCGGAAGGGGGAGGGACGATATTGAACATTAGTGCCACTTTGCATTATACAGCAGCTTG GTATCAAATCCATGTATCTGCAGCCAAGGCAGCTGTGGATGCTATAGCTAGAAATTTAGCTCTGGAGTGGGGGACTGATTACGACATCAGAGTGAACGGG ATTGCTCCAGGTCCGATCGGAGACACTCCCGGGATGAGCAAGCTCGTACCAGATGAGATCCTCAGCAGAACGAGAGAGTTTATGCCCTTGTATAAGCTTG GGGAGAAATGGGATATTGCAATGGCTGCTCTATACCTTGTATCTGATGCTGGGAGATATGTCAATGGAACAACGATTCCAGTGGATGGTGGACTGTGGCT GAGCAAGCCTCGCCATCTAGCAAAAGATGCAGTGAAGCAGATATCTCGAGCTGTCGAAAAGCGTTCCAGAGATAAACCTGTTGGGGTTCCTTCCAGCAAG CTTTAA
AA sequence Show only first row Show all	>Lus10031746 pacid=23180716 polypeptide=Lus10031746 locus=Lus10031746.g ID=Lus10031746.BGIv1.0 annot-version=v1.0 MSSSPSPFKQDILKGKVGLITGGGSGIGFEISTQLGKHGASIAIMGRRRSVLDAAVASLRSQGIQAVGFEGDVRKPEDAKRVIESTFQHLGRIDILINAA AGNFLASPEDLSPNGFRTVIDIDAVGTFTMCHAALNYLKKGGLGRDSSEGGGTILNISATLHYTAAWYQIHVSAAKAAVDAIARNLALEWGTDYDIRVNG IAPGPIGDTPGMSKLVPDEILSRTREFMPLYKLGEKWDIAMAALYLVSDAGRYVNGTTIPVDGGLWLSKPRHLAKDAVKQISRAVEKRSRDKPVGVPSSK L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	0	1
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	1.0	0.9684
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	1.4	0.8967
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	2.2	0.8807
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	2.4	0.8869
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	2.8	0.8819
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	3.5	0.8775
AT1G64850			Calcium-binding EF hand family...		Lus10010653 [exp]	3.9	0.8560
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	4.5	0.8687
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	4.9	0.8732
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	6.5	0.8748

Compare expression of checked genes

Lus10031746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.