Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 237 / 2e-70 GRAS RGL2 RGA-like 2 (.1) AT1G66350 230 / 4e-68 GRAS RGL1 RGA-like 1 (.1) AT5G17490 226 / 1e-66 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 223 / 3e-65 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 221 / 7e-64 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G21450 182 / 6e-50 GRAS SCL1 SCARECROW-like 1 (.1) AT5G41920 176 / 4e-49 GRAS GRAS family transcription factor (.1) AT5G48150 176 / 3e-48 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 174 / 3e-48 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 176 / 2e-47 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031172 [exp] 1031 / 0 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10036932 [exp] 295 / 6e-93 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10037055 [exp] 294 / 3e-92 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10017930 [exp] 285 / 2e-88 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10041540 [exp] 260 / 1e-77 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 260 / 6e-77 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10017626 [exp] 224 / 5e-65 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 223 / 1e-64 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022418 [exp] 204 / 3e-59 AT1G50420 592 / 0.0 scarecrow-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095100 [exp] 561 / 0 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.015G091200 [exp] 300 / 2e-94 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 299 / 3e-94 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.001G326000 [exp] 245 / 3e-72 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 234 / 8e-69 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 229 / 1e-66 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 226 / 1e-65 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 218 / 8e-63 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.015G008300 [exp] 198 / 5e-57 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.012G020200 [exp] 194 / 2e-55 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10031748 pacid=23180816 polypeptide=Lus10031748 locus=Lus10031748.g ID=Lus10031748.BGIv1.0 annot-version=v1.0 ATGGAATCCATGAACAACATTCTCTCCTTCCCGGCAGACGACATCAGTACCCTTCTCAACAGCCACGACCTCGCCATTCGACGATTCTGCCCCGCTCGCC TCAACCACGAACCACCATTCGGTCCGAACTTTGGTACCGACGTCGCGTATCATCAACAGTTGATGGATAGAGAACGAATATCAGCATCGTCATCATCGGA GGAGATTCATTACATCAACGACGACAACACTCCCTATTATTATTACCATGATCACGATATATCTGTCGTCGGTGCTACAAGCATCACGCACAGAAACGGA CGCTCGGAGGTGGATGAATTCGTTAACGGTTTCATCAACGCCGATCCCATCAATCATACAAGCTTGCATCTTTTCCAAGATGAAATGGAAACCTTCGACT TTATGTTCGATCATCATCGTGATCACTCGCCTCCCATGGTGATGGCCGAACACGATCACGAGATGGATATGATAAACTCCTCCTCTTTCCAAGACCTACT AGCACTTCCTAGTCATGGAGATGTCCCAAGAATGAGCGTTGACTCTGATTCTGATTATGGTCAGGGTCAAGATCAACCTGGAGCAGCAGAAGCAGTGGAC CAAGGTCTAACCTTGGTCCACTTGCTCCTAGCCTGCGCTGAGGCAGTGGGGTGCCGAGACACTCGCTTGGCCGAGTCGTTACTCAACCAGATTTGGTCAT CGGTTAACCCGTGGGGGGATTCGTTACAACGAGTCTCTCATTGCTTTGCAATGGGACTCAAATCCAGACTCTCTCTCCTCCTCAACAATGTAAACCCAAA CGGCACTTTCGCCAACGGCGGCGCAGCCAACGACGTCTCGTCGTCGATCAGTACCGGTGAACAACGGCTCGAAGCTTTCCACCTCCTTCACCAAACCACT CCTTATATCGCGTTCGGATTCATGGCGGCAAACGAAGCAATTGTTCAAGCAGCTACAGGAAAAAATTATCTTCATATAATCGATCTAGGCACGGAACACA CTCTCCAATGGCCTTCACTCCTCAGATCTCTGTCCTCCAGACCAGATGGACCTCCGGCCAGAATCCGAATCACAGGGTTGATGAACAAGAACAACAACGA TCCGATCTTAAATCTCGCCCTGGAATTAGAATCCAGGATGAAATCACTAGCTCGGGAAGCTCGATCGATCGGAATCACCGGATTCGAATTCAATTTAATT CCTGACACAGTCTCGCCGTCGCTGTTCAATTCGGAAACTCTCGACCTGAGACCAGGCGAGACTCTGTTCGTCAACGGAGTAATGAACCTGCACAAGTTCG TCAAGGAAAGCAGAGGCTCCCTGAAGGCGATCCTCCAGGCGATAAAGAAACTAGCCCCGACGTTATTGACGGTGGTGGAGCAGGACGCGAATCACAACGG TCCGTTCTTCCTTGGGAGGTTTCTGGAGTCGCTTCACTACTACTCCGCCATTTTCGACTCGCTGGAGGCGATCCCCTGTCTGCAGAGGAACAGCGCGGAG AGGATGAAGATGGAGACGCGGCATTTTGGGGAGGAGATCCGGAACATTGTGGCTTACGAAGGGTCGGATCGGGTCGAGAGACACGAGAGGGCGGATCAAT GGCGGAGGCAGCTCGGGAGGGCAGGGTTTCAGGCTGTGGAGATGAAGTGTATGAGCCAAGCTAGGATGCTGATGTCGGTTTATGGGTGTGGTGATGGTGA TGATGGTGGATTCACGCTGGCGAGTGAGAAAGGGTTTATGCTGCTGGGATGGAAAGGTCGGCCGATCTTGCTTGCTTCCGCTTGGCAAGTTCATCCTCAT CATCACCACAGTTCATCATCATCCTCTGCTAGATGA
AA sequence Show only first row Show all	>Lus10031748 pacid=23180816 polypeptide=Lus10031748 locus=Lus10031748.g ID=Lus10031748.BGIv1.0 annot-version=v1.0 MESMNNILSFPADDISTLLNSHDLAIRRFCPARLNHEPPFGPNFGTDVAYHQQLMDRERISASSSSEEIHYINDDNTPYYYYHDHDISVVGATSITHRNG RSEVDEFVNGFINADPINHTSLHLFQDEMETFDFMFDHHRDHSPPMVMAEHDHEMDMINSSSFQDLLALPSHGDVPRMSVDSDSDYGQGQDQPGAAEAVD QGLTLVHLLLACAEAVGCRDTRLAESLLNQIWSSVNPWGDSLQRVSHCFAMGLKSRLSLLLNNVNPNGTFANGGAANDVSSSISTGEQRLEAFHLLHQTT PYIAFGFMAANEAIVQAATGKNYLHIIDLGTEHTLQWPSLLRSLSSRPDGPPARIRITGLMNKNNNDPILNLALELESRMKSLAREARSIGITGFEFNLI PDTVSPSLFNSETLDLRPGETLFVNGVMNLHKFVKESRGSLKAILQAIKKLAPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEAIPCLQRNSAE RMKMETRHFGEEIRNIVAYEGSDRVERHERADQWRRQLGRAGFQAVEMKCMSQARMLMSVYGCGDGDDGGFTLASEKGFMLLGWKGRPILLASAWQVHPH HHHSSSSSSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031748 [exp]	0	1
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	4.5	0.8023
AT2G04865			Aminotransferase-like, plant m...		Lus10025434 [exp]	12.6	0.8087
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	17.7	0.7719
					Lus10018716 [exp]	18.7	0.7474
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	22.2	0.7996
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	24.6	0.7910
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10009060 [exp]	26.3	0.7934
					Lus10018536 [exp]	27.0	0.7883
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	30.7	0.7987
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	31.5	0.7753

Compare expression of checked genes

Lus10031748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.