Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16930 905 / 0 AAA-type ATPase family protein (.1) AT3G03060 904 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18330 708 / 0 AAA-type ATPase family protein (.1) AT4G36580 693 / 0 AAA-type ATPase family protein (.1) AT3G19740 87 / 2e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 84 / 2e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G28000 80 / 3e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 79 / 6e-15 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G05530 78 / 6e-15 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 77 / 8e-15 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031211 [exp] 1046 / 0 AT3G03060 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028305 [exp] 752 / 0 AT2G18330 920 / 0.0 AAA-type ATPase family protein (.1) Lus10041751 [exp] 731 / 0 AT2G18330 915 / 0.0 AAA-type ATPase family protein (.1) Lus10017405 [exp] 87 / 2e-17 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 83 / 4e-16 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010204 [exp] 83 / 4e-16 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 82 / 8e-16 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10029887 [exp] 80 / 1e-15 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 80 / 1e-15 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458200 [exp] 941 / 0 AT3G03060 910 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G143300 [exp] 936 / 0 AT5G16930 896 / 0.0 AAA-type ATPase family protein (.1) Potri.007G023900 [exp] 720 / 0 AT4G36580 868 / 0.0 AAA-type ATPase family protein (.1) Potri.005G122300 [exp] 177 / 6e-49 AT4G36580 285 / 2e-89 AAA-type ATPase family protein (.1) Potri.007G069800 [exp] 85 / 1e-16 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.013G016800 [exp] 82 / 2e-16 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.001G097600 [exp] 81 / 9e-16 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.005G025100 [exp] 80 / 9e-16 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.005G093300 [exp] 81 / 1e-15 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G007700 [exp] 78 / 3e-15 AT4G27680 615 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12037 [flax] [poplar] DUF3523 Domain of unknown function (DUF3523) CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10031787 pacid=23180692 polypeptide=Lus10031787 locus=Lus10031787.g ID=Lus10031787.BGIv1.0 annot-version=v1.0 ATGGCGAAAGCGGCTGCAATCGGGCTAGTCTCCGCCATTGCCGCCGCTACCTCCATCTCTCAATCCACCCCAGTTGCTTACGCCGACGGCCCTTTCAATT TCTCACCCTTCTCCGCCTCGCAGAACGCTGCTCTTCCTCCTCAGCCTTCTATGGCTTCGTCGTCATTGCCACCATCCGGTGGAGCAGAAGAACTCGCGGC GGCGGTCACAAATAAACCTAGAAATGACAACCCCAGAACTTCGTCTTCTGGATTTGACCCTGAGGCGCTCGAGAGAGGCGCTAAGGCCGTCAAAGATATC GCCTCTTCTTCCCACGCCAAAAAGGTGTTTGAATATCTGAAGACACAGGAAGAAACTAGACAAAAGGAATTCGCTGCAAAAGCTGCTGAGTATAAAGCAT TGCAAGCACAAGCTGAGACTGAGCGGCACAAGGTAGTATATGAGGAGCAGAGGAAGTTGGCTCAGCATCAAGCGCAGACCAAGTCCCAGATGGCGCAATA CCAGGACGAATTAGCAAGGAAGAGGATGCAGGCATGCAATAATGAGTACCAAAGAGCTAGAAATCAGGAGCTGGTGAAACTTCAAGAGGAATCTTCGGTC AGGCAGGAGCAGGCTCGGCGAGCTACTGAGGAACAGATTCAAGCCCAGCGACGTCAGACAGAGAGAGAGAAGGCCGAGATTGAAAGGGAGACGATTAGGG TGAGGGCTATGGCTGAGGCAGAAGGGCGAGCTCACGAAGCGAAGCTGGCAGAAGATGTTAACAGGAGAATATTGATCGATCGAGCTAATGCTGAACGGGA GAAGTGGGTTTCTGCCATCAATACTACCTTTGAACATATTGGAGGGGGGTTGAAAGCTGTATTGACTGATCAGAACAAGCTCGTTGTTGTGGTTGGCGGC GTGACAGCCCTCGCAGCAGGCATCTATACAACAAGGGAAGGGGCGAAGGTGGTGTGGAGCTATATAGATAGGATACTAGGCCAACCTTCGTTAATCAGAG AGTCATCGAGAGGGAAATATCCTTGGTCCGGAGTTTTCAAGCGTGGCTTGAGCACTCTGTCGCGCGATTCTGCTAGCAAAGGCCTCACAGATGGTAACGG CTTTGGAGATGTGATCTTGCATCCTTCTCTTCAGAAAAGAATTCAACAGCTGGCTAATGCAACTGCTAATACCAAATCTCATCAAGCGCCGTTCCGAAAC ATGCTCTTCTATGGCCCCCCTGGAACCGGGAAGACCATGGTTGCTCGAGAACTTGCTCGCAAATCTGGATTAGATTATGCTTTGATGACCGGTGGTGATG TTGCACCATTAGGATCACAGGCTGTTACAAAGATACACCAATTGTTCGATTGGTCCAAGAAGTCGAAGCGAGGCTTGCTGCTATTTATAGACGAGGCAGA TGCATTTTTGTGCGAGCGGAATAAGATCTACATGAGCGAAGCACAACGAAGTGCGTTGAACGCGCTCCTATTCCGGACCGGCGACCAGTCCAAAGACATA GTGCTAGCCCTTGCAACTAACCGTCCAGGAGATCTTGACTCGGCTGTGGCGGATCGTGTGGACGAGGTCCTTGAATTCCCCTTACCAGGGGAAGAGGAAC GGTTCAAGCTGCTGAAGCTCTACCTGAACAAGTACATAGCTCAGGCAGGGTCGAGCCAGTCCGGAAACTGGCTCAAGAGGCTGTTTAAGAAGAAACAGCA GCAGCAGAAAATCGAGATCAAAGGAGTGACGGACGATATTGTAAGGGAAGCAGCAGCGAAAACAGAAGGGTTCTCCGGAAGGGAGATTGCGAAACTGATG GCTGGTGTTCAAGCGGCAGTGTACGGAAGCAATGACTGCGTGCTGGATGCGAGCTTGTTCCGCGAAGTCGTGGATTACAAGGTCGCGGAGCACCAGCAGA GGATCAAACTGGCGTCGGATGGGAAGGGTAATTGA
AA sequence Show only first row Show all	>Lus10031787 pacid=23180692 polypeptide=Lus10031787 locus=Lus10031787.g ID=Lus10031787.BGIv1.0 annot-version=v1.0 MAKAAAIGLVSAIAAATSISQSTPVAYADGPFNFSPFSASQNAALPPQPSMASSSLPPSGGAEELAAAVTNKPRNDNPRTSSSGFDPEALERGAKAVKDI ASSSHAKKVFEYLKTQEETRQKEFAAKAAEYKALQAQAETERHKVVYEEQRKLAQHQAQTKSQMAQYQDELARKRMQACNNEYQRARNQELVKLQEESSV RQEQARRATEEQIQAQRRQTEREKAEIERETIRVRAMAEAEGRAHEAKLAEDVNRRILIDRANAEREKWVSAINTTFEHIGGGLKAVLTDQNKLVVVVGG VTALAAGIYTTREGAKVVWSYIDRILGQPSLIRESSRGKYPWSGVFKRGLSTLSRDSASKGLTDGNGFGDVILHPSLQKRIQQLANATANTKSHQAPFRN MLFYGPPGTGKTMVARELARKSGLDYALMTGGDVAPLGSQAVTKIHQLFDWSKKSKRGLLLFIDEADAFLCERNKIYMSEAQRSALNALLFRTGDQSKDI VLALATNRPGDLDSAVADRVDEVLEFPLPGEEERFKLLKLYLNKYIAQAGSSQSGNWLKRLFKKKQQQQKIEIKGVTDDIVREAAAKTEGFSGREIAKLM AGVQAAVYGSNDCVLDASLFREVVDYKVAEHQQRIKLASDGKGN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	0	1
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	1.4	0.9649
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	2.0	0.9572
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	4.6	0.9543
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	4.7	0.9491
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	5.3	0.9477
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	5.5	0.9523
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	6.0	0.9532
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	8.8	0.9505
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	10.0	0.9496
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	11.0	0.9452

Compare expression of checked genes

Lus10031787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.