Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60110 99 / 2e-21 DNA-binding bromodomain-containing protein (.1) AT2G44430 96 / 3e-20 DNA-binding bromodomain-containing protein (.1) AT3G57980 87 / 2e-17 DNA-binding bromodomain-containing protein (.1) AT2G42150 74 / 2e-13 DNA-binding bromodomain-containing protein (.1) AT1G61215 57 / 5e-08 BRD4 bromodomain 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031219 [exp] 525 / 9e-178 AT3G57980 177 / 3e-47 DNA-binding bromodomain-containing protein (.1) Lus10010335 [exp] 88 / 1e-17 AT2G44430 320 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10021861 [exp] 68 / 7e-12 AT2G44430 147 / 6e-39 DNA-binding bromodomain-containing protein (.1) Lus10021860 [exp] 66 / 4e-11 AT2G44430 104 / 1e-24 DNA-binding bromodomain-containing protein (.1) Lus10018457 [exp] 52 / 9e-07 AT1G61215 288 / 6e-93 bromodomain 4 (.1) Lus10011227 [exp] 52 / 2e-06 AT1G61215 288 / 7e-93 bromodomain 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013600 [exp] 145 / 6e-36 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.003G212500 [exp] 144 / 1e-35 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.T042048 [exp] 144 / 1e-35 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.009G023100 [exp] 76 / 5e-14 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1) Potri.001G229300 [exp] 75 / 1e-13 AT2G44430 301 / 4e-93 DNA-binding bromodomain-containing protein (.1) Potri.004G036900 [exp] 58 / 2e-08 AT1G61215 323 / 1e-105 bromodomain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031796 pacid=23180706 polypeptide=Lus10031796 locus=Lus10031796.g ID=Lus10031796.BGIv1.0 annot-version=v1.0 ATGGCTAAGGAACGCGACGCAGCACCAACCGCCGCCGCCGCCCTGTCCTGGGGCACGTTGGAGGAGCTCCTCCTCGCCTGCGCCGTGAACCGACACGGAA CCAAGAGCTGGGACTCCGTCGCCGTCGAGGTCCTCAACCGGACAGAAACTCTGTCCTCCCTCACTTCCCAGCAGTGTAAGGACAAGTTCAATGACCTCAG GCGACGCTTCCTGCCGAGGGTCCACCACTCCTCCGCCGCCACCGCTTCTGGGTTGGTCCCGATGGTCGACGAGCTCCGGCGGCTCCGCGTAGAGGAGCTC CGACGTGAGGTCCAACGGCGTGACCTGTCGATCGAGAGTCTCGAATTGAAGGTGAAGAGATTGGAAGAGGAGAGGGAGAGGAGCTTGAAGGAAGAGGAGG AAGAGGAGGCAGATCTAGCCAGGGAGGGCCGACGGCTATCGGCCGCCGAGAAATCCGGCGGCGGGTACGATTCGGCCGATGACCGGGAGAATGGATCGTT CAACGAATCCAATTCAACGAGTCAACAACAGAAAGCTGGAACGACGACGTTGAAGGAGGAGGAGGTGGATATAAAACCCGAAACGGATTCGAGAAACGGA TCGGATCTGGGGCGGGACCATTCTGACCCGTCAGGAGAGCGGATCAGCTCGTACAACTGTAATTTGGACGATAAACGAGACGAGAAATGTCAAGCCGGAG AGAAGAATAACGAATTGGGCGGCGAATCGGTGGGGGAGTCGAAGCGGGAAGAGACAAAGGAGAAGGAGAAACAGAGCAGTGACGTGCAGAGTTCTGTCAG CTTGAAAAAGAAACGGCGTCGTCGAGTTGGCAGCGGCGGCGCTACGACGGCGGGAGTTGCCGCAAGTAGCAGCGGCGAAGACCCCGAGGGTGGTGACGAG GTTTCTCCCGCCAGGAAGCGGGTTGCCGCTGTGAAATCCGAACCGTTGGTTAGAATCCTCGAGATTATCCGGTCTCATCGGCTCGGCTCCGTTTTCGAAC GGCGGCTCCGAAGCCAGGAATCGGAGAGATACAAAAGCTTGATCCGGCAGCACATCGACCTCCGGACGGTCCAACTCCGACTCGACAAGGGAGTGTACTT AAGCTGCATCCCTAAATTCTACAGAGACCTCCTCCTCCTATTCAACAACGCCATTCTCTTCTTCCGGGAGAGTTCGCCGGAGAACAATGCAGCTCGTGAA CTCCGATCGCTTGTCCTGCGTAACATGAAAGACAAGCTACGAAAGCCTCCACCTTCTTCTTCATCTAGTAAGCCTCAACCTCAACCTCAATCGAAACCTC CGCCTACCCTGCAGCCGGCAGCGGCAACACTGGCCAACCAGAACGTGAAGCTTGAGGCGGCAGCTTCACAGAAGAAAACGAGTACTTCAACCTCGAAACC TGACAAGTCTTCCTCAACTCTGGTTTCCTGCGGGAAGCGCAACGTCTCGTTGAAAGCAGCCGCCTCGTCGGAGAAGCTGCAGCAGACGCCGTCGTCCGTT AAACTTGTTAATAACAGCAAGCAGAAACAGAGAGCTTCGGCTGAAGAGAAAGACAAGGAGAAGCCGAAGGTGAACAGTAAAACGGCTGAATTAGCTTCTT CTTCAGTTCGGAAGGTCGAAGAAAAGGCAAAGGAAGATGTCGAAGACGACGAAGAAGAGGAGATCAAGGATGTTCGTAAGGCGAGAACTACGGTGACAAA TACGAGGGAGAGGACGACCGGAGTAAAAGGCCGAAGAAATGCAAGGGTGGCGGTGACCACGACGGTGACTGGGAACAAGAACGGTGGAGGAGGAGAAGGT AGTAATAAGCACAAGTATGGCGGAAATGAGTTGAGCTCGCACGACGCTCTGGATTCGAAAGCGGAGAGGAAAGAGCAGACTGCGACGGTGAGGAAGAAGA GAGGGGCGGCGAGTTTTTTGAAGAGGATGAAGCAGAACAGCGAAGCGACGAACAATAAGAACGACGACGATGGTTCGTCGTCGTCTTCGTTGTCCTCATC CTCCTCCTCCGAGAAGGACGGCGATAAGAAGACAAAGGAAGAGAAGGGTAAGGAGAAGAAAGGTAGCAAGGCGGTGCGACAAGTTTCGAACAAAGATATG GCGAGGGAGCGGCCGATCACGAGAAGTTCTAGGGGCAGAGGGAGAGGAGAGAGCGGGAAAGGGAGGAGAGGTGGCGGACGGGGAGGAAGGAAGGGAGACG GTGGAGGCGGAGGAGGTAGAGGTGGTAGTGCGGTGGCTAGCGTGGAGCCATCAGGGAAGAGAGGAAGAGATGGTGACGGCGACGGTGGGAGTGGAGGAAG GGCTAGAAAGAGGGCAAGGAGGTGA
AA sequence Show only first row Show all	>Lus10031796 pacid=23180706 polypeptide=Lus10031796 locus=Lus10031796.g ID=Lus10031796.BGIv1.0 annot-version=v1.0 MAKERDAAPTAAAALSWGTLEELLLACAVNRHGTKSWDSVAVEVLNRTETLSSLTSQQCKDKFNDLRRRFLPRVHHSSAATASGLVPMVDELRRLRVEEL RREVQRRDLSIESLELKVKRLEEERERSLKEEEEEEADLAREGRRLSAAEKSGGGYDSADDRENGSFNESNSTSQQQKAGTTTLKEEEVDIKPETDSRNG SDLGRDHSDPSGERISSYNCNLDDKRDEKCQAGEKNNELGGESVGESKREETKEKEKQSSDVQSSVSLKKKRRRRVGSGGATTAGVAASSSGEDPEGGDE VSPARKRVAAVKSEPLVRILEIIRSHRLGSVFERRLRSQESERYKSLIRQHIDLRTVQLRLDKGVYLSCIPKFYRDLLLLFNNAILFFRESSPENNAARE LRSLVLRNMKDKLRKPPPSSSSSKPQPQPQSKPPPTLQPAAATLANQNVKLEAAASQKKTSTSTSKPDKSSSTLVSCGKRNVSLKAAASSEKLQQTPSSV KLVNNSKQKQRASAEEKDKEKPKVNSKTAELASSSVRKVEEKAKEDVEDDEEEEIKDVRKARTTVTNTRERTTGVKGRRNARVAVTTTVTGNKNGGGGEG SNKHKYGGNELSSHDALDSKAERKEQTATVRKKRGAASFLKRMKQNSEATNNKNDDDGSSSSSLSSSSSSEKDGDKKTKEEKGKEKKGSKAVRQVSNKDM ARERPITRSSRGRGRGESGKGRRGGGRGGRKGDGGGGGGRGGSAVASVEPSGKRGRDGDGDGGSGGRARKRARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44430			DNA-binding bromodomain-contai...		Lus10031796 [exp]	0	1
					Lus10041954 [exp]	10.5	0.8718
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	12.2	0.8718
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	19.7	0.8521
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10033144 [exp]	26.6	0.8513
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	27.1	0.8612
AT3G06180			Ribosomal protein L34e superfa...		Lus10004432 [exp]	34.9	0.8435
AT1G74470			Pyridine nucleotide-disulphide...		Lus10008405 [exp]	56.5	0.8384
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10027819 [exp]	58.2	0.8228
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Lus10041950 [exp]	59.5	0.8247
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	60.0	0.8361

Compare expression of checked genes

Lus10031796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.