Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53750 800 / 0 RPT1A regulatory particle triple-A 1A (.1) AT1G53780 691 / 0 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G19990 356 / 6e-120 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 355 / 2e-119 RPT6A AAA-type ATPase family protein (.1) AT1G45000 333 / 4e-111 AAA-type ATPase family protein (.1.2) AT5G43010 333 / 5e-111 RPT4A regulatory particle triple-A ATPase 4A (.1) AT4G29040 319 / 4e-105 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 319 / 4e-105 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT3G05530 317 / 2e-104 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT5G58290 315 / 5e-104 RPT3 regulatory particle triple-A ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031243 [exp] 836 / 0 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 357 / 3e-120 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10017972 [exp] 333 / 4e-111 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017475 [exp] 332 / 2e-110 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10028807 [exp] 332 / 4e-110 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041964 [exp] 326 / 3e-108 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10015524 [exp] 316 / 2e-105 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10029887 [exp] 318 / 6e-105 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 318 / 1e-104 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216600 [exp] 807 / 0 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 801 / 0 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 798 / 0 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 355 / 2e-119 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 355 / 3e-119 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.002G031400 [exp] 337 / 2e-112 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 334 / 1e-111 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 334 / 2e-111 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 333 / 4e-111 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G025100 [exp] 318 / 5e-105 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10031815 pacid=23180751 polypeptide=Lus10031815 locus=Lus10031815.g ID=Lus10031815.BGIv1.0 annot-version=v1.0 ATGGCGCCCACTGAAGCGGAAGAGTACGACGCAACGAAGGAGGAGAAGAACCCTCGGCCTCTGGATGAAGATGATATCGCTCTGCTTAAGACATATGGGT TAGGGCCGTATTCGAACAGCATTAAGAAGGAGGAGAAGGAAATTAAGGACTTGGCTAAGAAGATTAATGACCTCTGTGCTGCTTGGGGAAAAATTGTGTG TTCTGAAGTTGAATTTGCTGGCTTTTTGTCTCAATCCGTAGGTATCAAGGAATCTGACACTGGTTTGGCTGCACCGAGTCAGTGGGATCTTGTCTCTGAT AAACAGATGATGCAGGAGGAACAACCGCTTCAAGTTGCTCGGTGCACGAAGATTATTAATCCGAATACTGAGGATGCCAAGTACGTAATCAATGTCAAAC AAATTGCCAAGTTTGTTGTTGGCCTTGGTGACAAAGTATCCCCTACTGATATCGAAGAGGGCATGCGAGTTGGGGTTGATCGTAACAAGTATCAGATTCA GATTCCATTGCCACCAAAGATCGATCCAAGTGTTACCATGATGACAGTGGAAGAAAAGCCTGATGTAACATACAATGATGTTGGTGGCTGTAAAGAGCAG ATCGAGAAGATGCGAGAAGTTGTTGAGCTTCCTATGCTTCACCCAGAGAAATTTGTGAAACTTGGAATTGATCCTCCAAAAGGTGTCCTTTGCTATGGTC CACCCGGAACCGGGAAAACCTTGCTGGCTAGAGCTGTGGCCAACAGAACAGATGCATGTTTCATTCGTGTTATCGGCAGTGAGCTGGTTCAGAAATATGT TGGAGAAGGAGCTCGCATGGTTCGGGAGCTTTTCCAGATGGCTAGGTCAAAGAAGGCATGCATTGTCTTCTTCGATGAAGTTGATGCCATAGGTGGTGCA CGTTTTGATGACGGCGTAGGTGGAGACAACGAAGTCCAGCGGACAATGCTTGAAATCGTCAACCAGCTCGATGGTTTTGATGCCAGAGGAAACATCAAAG TGTTGATGGCTACAAACAGACCCGATACCTTGGACCCAGCCCTTCTACGTCCTGGAAGGCTAGATCGTAAGGTTGAATTCGGACTCCCAGATATGGAGAG TAGGACTCAGATTTTCAAGATCCACACACGGACAATGAACTGCGAAAGAGATATTCGTTTCGAACTACTTGCACGTCTTTGTCCCAATTCAACTGGAGCT GACATCAGGAGCGTGTGCACGGAAGCTGGGATGTATGCGATTCGAGCACGGAGGAAGACGGTGACAGAGAAGGACTTCCTCGATGCAGTGAACAAGGTCA TTAAAGGGTATCAGAAGTTCAGCGCCACCCCGAAGTATATGGTCTACAACTAA
AA sequence Show only first row Show all	>Lus10031815 pacid=23180751 polypeptide=Lus10031815 locus=Lus10031815.g ID=Lus10031815.BGIv1.0 annot-version=v1.0 MAPTEAEEYDATKEEKNPRPLDEDDIALLKTYGLGPYSNSIKKEEKEIKDLAKKINDLCAAWGKIVCSEVEFAGFLSQSVGIKESDTGLAAPSQWDLVSD KQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQ IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDMESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGA DIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	0	1
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	1.4	0.8455
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10029887 [exp]	4.5	0.7960
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	4.6	0.8162
AT5G35080			unknown protein		Lus10008819 [exp]	4.9	0.8280
AT4G02425			unknown protein		Lus10030370 [exp]	7.5	0.8151
AT5G17190			unknown protein		Lus10034347 [exp]	12.0	0.7548
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	12.0	0.7824
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	12.5	0.7907
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	14.0	0.7757
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10027269 [exp]	14.5	0.7688

Compare expression of checked genes

Lus10031815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.