Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20840 518 / 0 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G51190 506 / 3e-176 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 370 / 2e-123 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G17430 369 / 2e-122 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 337 / 2e-112 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G10510 341 / 1e-111 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 338 / 2e-111 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT4G37750 330 / 1e-107 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G54320 234 / 3e-72 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G79700 214 / 5e-66 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031260 [exp] 749 / 0 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 334 / 1e-111 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 333 / 1e-108 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 333 / 2e-108 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 328 / 5e-107 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 303 / 1e-97 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10036719 [exp] 252 / 8e-79 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 251 / 1e-78 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 239 / 1e-75 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205700 [exp] 580 / 0 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 563 / 0 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 387 / 6e-128 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 382 / 9e-128 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.006G167700 [exp] 380 / 3e-127 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.010G181000 [exp] 384 / 2e-126 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 343 / 8e-113 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 343 / 2e-111 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G011600 [exp] 337 / 5e-111 AT5G10510 510 / 5e-177 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Potri.014G012200 [exp] 342 / 1e-110 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10031831 pacid=23180757 polypeptide=Lus10031831 locus=Lus10031831.g ID=Lus10031831.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGACGGCGAGTGATGGCTACGAGTATAGTACGGAGAGTGCGAGTAATCTACAGGCGTTGACGCTGTCGATGGGGAGTGCAAGTGGGAAGA GTGAGACTAGTGGGGATAATAGTACTAGTACTAATAGTACCGCAGCCGTTGATGCCGCCGGCGCCGCCACTCCGAGGAGGACTTTGGATACGTTTGGTCA ACGGACTTCCATCTATCGCGGCGTCACTAGGCATAGATGGACAGGTAGGTACGAAGCTCATCTATGGGACAATAGCTGTAGGAGGGAAGGCCAATCGCGG AAAGGGCGTCAAGTGTATCTAGGTGGTTATGACAAAGAAGAAAAAGCTGCTAGGGCTTACGACTTGGCTGCTTTAAAGTATTGGGGACCATCCACTACCA CTAATTTCCCAATAAGCAACTATGAGAAAGAATTGGAGGAAATGAAGCATATGACTCGCCAGGAATTCGTTGCATCGATTCGAAGGAAGAGCAGTGGCTT CTCTAGGGGTGCATCCATGTATCGTGGTGTTACAAGGCACCACCAGCATGGTAGATGGCAAGCTAGGATCGGTAGAGTTGCCGGAAACAAAGATCTCTAC CTCGGCACCTTCAGCACGGAGGAGGAAGCAGCCGAAGCGTACGACATAGCGGCAATCAAGTTCAGAGGACTTAACGCCGTTACCAACTTTGACATGAACC GTTACGACGTCAAGAGCATCCTGGAGAGCAACACGCTCCCCATCGGCGGTGGGGCCGCCAAACGGCTTAAGGAGGCTCAAGCCTTGGAGTCGTCACGCAA ACGTGACGAAATGATTGCTCTCGGCTCGACTTACCCTTATGCAACCACCGGCTCGAGCAGGCTTCAAGCCTACTCGCTCATGCAGCAGCAGCCGAGCCCG TACGACCAAGCCCAGCCGCTGCTCACTTTGCAAAACGGCCAGGACATTTCTCCATACGGTGCCGCACATGATGCAACGTCGTCGTTTCATCACAACAATT ACTTGCAGACCCAGCTCCACTTGGCCCACCAATCAGCTTCCGCCACGTCATACCAAGGAGGTGGATCATCGTCGTCGCAGTTCTACAACAGCTATCTCCA GAGTAACCCCGGGATGCTCCATGGGTTGATGAACATGGGATCCGGTTCGTCATCGATTATCGATACTAATGGGGGCGGAGGAGGTGGGTACGGTGGCGGT TCCGGGTTTCTAGGTAACGGGTTGGAAATGGGTACCGGTGGATCGAGTAATCATCAGGTTGGACCGGGGTCTGGCGAGGAAGGTGTAGGTGCTTTGGTTA AGGTTGACTATGACATGCCTTCGACCGGCGGGTATGGTGGTTGGACCGGCGAATCGGTTCCCGGGTCGAACCCGAGCGTGTTCACAATGTGGAATGACTA A
AA sequence Show only first row Show all	>Lus10031831 pacid=23180757 polypeptide=Lus10031831 locus=Lus10031831.g ID=Lus10031831.BGIv1.0 annot-version=v1.0 MAAATASDGYEYSTESASNLQALTLSMGSASGKSETSGDNSTSTNSTAAVDAAGAATPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSR KGRQVYLGGYDKEEKAARAYDLAALKYWGPSTTTNFPISNYEKELEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLY LGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQALESSRKRDEMIALGSTYPYATTGSSRLQAYSLMQQQPSP YDQAQPLLTLQNGQDISPYGAAHDATSSFHHNNYLQTQLHLAHQSASATSYQGGGSSSSQFYNSYLQSNPGMLHGLMNMGSGSSSIIDTNGGGGGGYGGG SGFLGNGLEMGTGGSSNHQVGPGSGEEGVGALVKVDYDMPSTGGYGGWTGESVPGSNPSVFTMWND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	0	1
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	1.0	0.9690
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	2.0	0.9361
AT3G07620			Exostosin family protein (.1)		Lus10008751 [exp]	3.5	0.9303
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	3.9	0.9355
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10009939 [exp]	5.2	0.9216
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	6.5	0.9283
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	6.7	0.9335
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	7.4	0.9146
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031285 [exp]	7.7	0.9181
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	9.6	0.9341

Compare expression of checked genes

Lus10031831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.