Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14700 908 / 0 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 898 / 0 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT1G07270 141 / 2e-35 Cell division control, Cdc6 (.1) AT2G29680 138 / 2e-34 CDC6, ATCDC6 cell division control 6 (.1.2) AT3G01460 47 / 5e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G50620 45 / 0.0001 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G24330 44 / 0.0004 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G44800 44 / 0.0005 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G20280 43 / 0.0006 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G09790 43 / 0.0007 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031846 [exp] 1395 / 0 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10031279 [exp] 1294 / 0 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10011627 [exp] 137 / 3e-34 AT2G29680 576 / 0.0 cell division control 6 (.1.2) Lus10009446 [exp] 130 / 1e-31 AT2G29680 584 / 0.0 cell division control 6 (.1.2) Lus10015537 [exp] 49 / 2e-05 AT2G19260 86 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10000427 [exp] 48 / 2e-05 AT1G07270 150 / 1e-39 Cell division control, Cdc6 (.1) Lus10020012 [exp] 48 / 3e-05 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10008495 [exp] 45 / 0.0002 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10030625 [exp] 45 / 0.0004 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054300 [exp] 1021 / 0 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Potri.001G250200 [exp] 129 / 2e-31 AT1G07270 626 / 0.0 Cell division control, Cdc6 (.1) Potri.006G075400 [exp] 49 / 1e-05 AT2G19260 202 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G126300 [exp] 47 / 3e-05 AT2G01120 601 / 0.0 origin recognition complex subunit 4 (.1.2) Potri.001G123400 [exp] 47 / 7e-05 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.018G142300 [exp] 47 / 7e-05 AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G110100 [exp] 47 / 8e-05 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.017G072460 [exp] 45 / 0.0002 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.003G126600 [exp] 45 / 0.0002 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.002G197400 [exp] 45 / 0.0003 AT4G02110 374 / 6e-110 transcription coactivators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF01426 [flax] [poplar] BAH BAH domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10031848 pacid=23180562 polypeptide=Lus10031848 locus=Lus10031848.g ID=Lus10031848.BGIv1.0 annot-version=v1.0 ATGGCGCACACTCAAACTCCCAGAAAACCATCCCTCAAACTCTCATCTCCTCCTCCTCCAGCAAGTTCCCTCACTCCCCAGACTCCCCTCACCGCCGACC AGCCACGCCGATCCTCCCGCCGTCTACCCTTCAACCCAGAATCAACTGCCGCCACCGAGGAGACAGTGAAGCCTTCGCCAAAGAGGAAGAAGAAGAAGAC CCAAACCAAATCGACAAAATCAAGAACGAAATCTGCCGATGTCGTCGAGGTTTCTCCCATCTCTCCGGCGTCTCCCGATCAATCCGAGGCGAGGAAGCGG AAGAGGAAGTATGAATCGGAGAAGAGAAATGTAGTGACAAGGGCAGCTTCGAAGAATTGCAGTAGCAAGAGAGTTTATTATAAGAAAGTGGTGTACGATG GAGGCGAATTCGAGGTCGAGGACGACGTGTACGTGAAGAGGAGAGAGGACGCGAGCTCGGACGACGAGGCTCCCGAGGACGAAGAGTGCAGAATATGCTT CAAAACGGGGAATGCTGTCATGATCGAATGCGACGATTGCTTGGGAGGGTTTCACTTGAGGTGCTTGAAGCCTCCACTGAAAAATGTACCTGAAGAGGAT TGGATTTGTGGATTCTGCCAGGAGAAGCGATCGGGAAAGGCGATCGAGATGCCTAAGCCGCCTCCCGGGAAGAAGAGGGTCAGAACTTTGAGGGAGAAGC TTCTTGACAGTCATCTATGGGCTGCGCACATTGAGAGTTTATGGAAGGAGAAGGATGGTAGCTACTGGTTTCGAGGTCGATGGTACATCATACCGGAAGA GACTGCTACAGGGAGACAGCCTCATAATTTAAGGAGAGAGCTTTACAGGTCGAATGATTTCACTGATATTGAGATGGAGTCGATCCTAAGGCATTGCTCG GATGGTGAAGATGCTGATGATAGTGATGAAGACTGGAATTCATACAAAGATGCAGTAGTTCCTGATTCCGAGGATGGCAAGGAATATGAAGCTGAAAATG ATACAATTTTTCCCAAGAGAACACATTCTTTAGCTGCAAACTCTAAGAAAGGCCAATTTTTCGGCCTTGAGAAGATAGGAGCAAAGAGGATACCGGAACA TGTACGATGTCACAAGCAAACCGAGCTAGAGAGAGCGAAAGCTATGTTGTTATTGGCTACACTGCCAAAGTCTCTTCCTTGCCGGAACAAAGAAATGGAT GAGATAACTATATTTATTAAAGGTGCCATCTGTGACGATCAATGTCTAGGTCGTTGCCTCTACATCCATGGTGTCCCGGGAACCGGGAAGACAATGAGTG TGCTATCTGTGATGAGGAACCTAAGGGCTGAAGTTGAAGCAGGAGTTACGAAACCTTACTGTTTTGTCGCGGTTAATGGTCTGAAGTTAGCATCACCAGA GAATATCTATAAGGTTATTTATGAAGCTCTAACTGGGCACAGGGTTAGCTGGAAAAAGGCGCTTCATTTGCTTAATGAGAGATTTTCAAATGGAAATAAT ATTGGCAAAGCAGATGACAAGCCCTGTATTCTACTCATCGATGAGCTTGATCTCCTTGTGACAAGAAATCAATCGGTTCTGTACCACATTCTCGATTGGC CAAATAAGCCACACTCCAAGTTGATTGTGATAGGAATAGCAAACACAATGGATCTTCCGGAAAAGTTGCTCCCTCGAATCTCAAGCCGTCTGGGTATCCA GAGGCTTTGCTTTGGTCCCTACAACTATCAACAACTTCAAGAGATCATTTCAAGTCGCCTTAAAGGAATTGACGTGTTTGACAAGCAAGCTATAGAGTTC GCCTCCAGGAAGGTGGCGGCCATATCTGGAGATGCACGTCGTGCTCTAGAAATATGCAGGCGTGCAGCTGAAGTTGCTGACTATCGCATTAAAAATCTCG GTTCATCTCCCATAGGGAAGACTATGGTTGTTTTCTCAGACGTTGAAGCAGCCATTGAAGAAATGTTCCAGGCACCTCATATCCAAGTAATGAGAAGCTG CTCGAAAGTGGGCAAAATCTTCTTGACAGCCATGGTATACGAGCTATACAAGACTGGAATGGGCGAGACAACTTTCGAGAAGGTAGCAACGACTGTATCA TGCTTCTGCACCAGCAACAAAGAAACATTTCCTGGCTGGGACACACTGATGAATGTTGGATGTATGCTGGGTGAAAGCAGAATAGTTGTGTGTGAACCAG GAGCCAGACACATGCTGCAGAAACTGCAGCTCAACTTTCCAAGTGATGATGTGACATTTGCGCTGAAAGACAGCAAGGAAATGCCGTGGCTCGCCAAGTA CTTATGA
AA sequence Show only first row Show all	>Lus10031848 pacid=23180562 polypeptide=Lus10031848 locus=Lus10031848.g ID=Lus10031848.BGIv1.0 annot-version=v1.0 MAHTQTPRKPSLKLSSPPPPASSLTPQTPLTADQPRRSSRRLPFNPESTAATEETVKPSPKRKKKKTQTKSTKSRTKSADVVEVSPISPASPDQSEARKR KRKYESEKRNVVTRAASKNCSSKRVYYKKVVYDGGEFEVEDDVYVKRREDASSDDEAPEDEECRICFKTGNAVMIECDDCLGGFHLRCLKPPLKNVPEED WICGFCQEKRSGKAIEMPKPPPGKKRVRTLREKLLDSHLWAAHIESLWKEKDGSYWFRGRWYIIPEETATGRQPHNLRRELYRSNDFTDIEMESILRHCS DGEDADDSDEDWNSYKDAVVPDSEDGKEYEAENDTIFPKRTHSLAANSKKGQFFGLEKIGAKRIPEHVRCHKQTELERAKAMLLLATLPKSLPCRNKEMD EITIFIKGAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAEVEAGVTKPYCFVAVNGLKLASPENIYKVIYEALTGHRVSWKKALHLLNERFSNGNN IGKADDKPCILLIDELDLLVTRNQSVLYHILDWPNKPHSKLIVIGIANTMDLPEKLLPRISSRLGIQRLCFGPYNYQQLQEIISSRLKGIDVFDKQAIEF ASRKVAAISGDARRALEICRRAAEVADYRIKNLGSSPIGKTMVVFSDVEAAIEEMFQAPHIQVMRSCSKVGKIFLTAMVYELYKTGMGETTFEKVATTVS CFCTSNKETFPGWDTLMNVGCMLGESRIVVCEPGARHMLQKLQLNFPSDDVTFALKDSKEMPWLAKYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	0	1
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031846 [exp]	1.4	0.8849
AT5G21140		EMB1379	embryo defective 1379 (.1)		Lus10019555 [exp]	2.8	0.8029
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	3.5	0.8101
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	4.2	0.8301
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	4.6	0.8231
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	6.0	0.8023
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10039661 [exp]	7.7	0.8153
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	10.2	0.8112
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10030956 [exp]	13.0	0.7518
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	17.3	0.8076

Compare expression of checked genes

Lus10031848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.