Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12870 211 / 1e-66 MYB ATMYB46 myb domain protein 46 (.1) AT3G08500 208 / 1e-64 MYB ATMYB83 myb domain protein 83 (.1) AT1G09540 186 / 5e-56 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT1G57560 182 / 4e-55 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 183 / 5e-55 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G01680 179 / 1e-54 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT3G13890 181 / 6e-54 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G63910 173 / 7e-51 MYB AtMYB103 myb domain protein 103 (.1) AT3G12720 164 / 3e-48 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT2G16720 160 / 3e-47 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031281 [exp] 505 / 0 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10002559 [exp] 260 / 2e-84 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10027369 [exp] 254 / 2e-82 AT5G12870 218 / 5e-69 myb domain protein 46 (.1) Lus10029520 [exp] 212 / 2e-65 AT5G12870 220 / 2e-69 myb domain protein 46 (.1) Lus10039610 [exp] 210 / 7e-65 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10019707 [exp] 181 / 8e-55 AT3G08500 184 / 2e-56 myb domain protein 83 (.1) Lus10015608 [exp] 179 / 3e-53 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038022 [exp] 180 / 2e-52 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10024669 [exp] 171 / 1e-48 AT1G63910 260 / 2e-82 myb domain protein 103 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053900 [exp] 228 / 2e-72 AT5G12870 224 / 8e-72 myb domain protein 46 (.1) Potri.009G061500 [exp] 220 / 2e-69 AT3G08500 224 / 6e-71 myb domain protein 83 (.1) Potri.001G258700 [exp] 219 / 5e-69 AT5G12870 219 / 4e-70 myb domain protein 46 (.1) Potri.001G267300 [exp] 214 / 2e-67 AT3G08500 266 / 1e-87 myb domain protein 83 (.1) Potri.013G001000 [exp] 184 / 2e-54 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.005G001600 [exp] 182 / 7e-54 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.001G197000 [exp] 181 / 7e-54 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.014G111200 [exp] 180 / 1e-52 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.012G084100 [exp] 178 / 1e-52 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 177 / 1e-52 AT1G57560 254 / 2e-82 myb domain protein 50 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031850 pacid=23180793 polypeptide=Lus10031850 locus=Lus10031850.g ID=Lus10031850.BGIv1.0 annot-version=v1.0 ATGAGGAAGCCAGCTGAACCCACTTCAGGCAACACTACCACCGCCATGGTTAAGCTGAGGAAAGGGCTGTGGTCGCCCGAGGAAGACGAGAAGCTGATGA GCTACATGATGACCAATGGACAAGGTTGCTGGAGTGATGTTGCTAGGAATGCCGGCCTTCAACGGTGTGGCAAGAGCTGCCGGCTCCGGTGGATCAACTA CCTCCGGCCGGACCTTAAGAGAGGAGCTTTCTCCCCTCAGGAGGAAGAGCTCATCGTCCACTTGCATTCCCTCCTTGGCAATAGGTGGTCACAAATTGCG GCTCCCTTTGCGGCTCGTTTGCCAGGGAGGACAGACAATGAGATTAAGAATTTTTGGAACTCCACCGTAAAAAAAAGACTAAAGAACATACAGTCCTCCT CAGCATCGCCGAACACAAGCGACTCCTCCTCCGACCACCAACCTGTCGGAAGCAAAGACCACAACGCCATGATGGGGTTGTCCTCGTCGTCACCTTCGAA CTTTCTGCCTCCTCCCATGTTCCTGGTGGACCCATCTTTGACATCAACAACAACAACAAACCACACCATGGACCCAAATTCATCACAAATCCTTGACCAT CACCCTAACCACCACCATGGTCTTATGATGAACAACATGTATGGTGCAAACAATCTCTCCTCGTACTTCGACTCACACATGGCTAGCAACATTCCTCCCT CTCGTATGGGTTCAGAGCAAGGGATGTTCGTCGTCGGTGGTGATGGTGGTGGTTGTGGTAATGGTGAGCTTCAAGTGATCCCACCATTAATGGAGGAAAC CATGAATGGTGCTAATGACACCAACCTCACAACTAATTGCAATAATAACAAGTACCCATTTGTGAATAGTTACACCATTAAGGAAGAGATTAGTGACACT AATTTGGGCAACTATTGGCAAGGAGATCATCATCATCATCATCATCAAGATAGAGTTGGGGAGTGGGACTTTGAAGAGCTCATGAAAGATGTCTCTTGCT TCCCTTTCCTTGACTTCCAAGTTGAATAG
AA sequence Show only first row Show all	>Lus10031850 pacid=23180793 polypeptide=Lus10031850 locus=Lus10031850.g ID=Lus10031850.BGIv1.0 annot-version=v1.0 MRKPAEPTSGNTTTAMVKLRKGLWSPEEDEKLMSYMMTNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIA APFAARLPGRTDNEIKNFWNSTVKKRLKNIQSSSASPNTSDSSSDHQPVGSKDHNAMMGLSSSSPSNFLPPPMFLVDPSLTSTTTTNHTMDPNSSQILDH HPNHHHGLMMNNMYGANNLSSYFDSHMASNIPPSRMGSEQGMFVVGGDGGGCGNGELQVIPPLMEETMNGANDTNLTTNCNNNKYPFVNSYTIKEEISDT NLGNYWQGDHHHHHHQDRVGEWDFEELMKDVSCFPFLDFQVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	0	1
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031281 [exp]	1.0	0.9902
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	2.8	0.9847
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10033239 [exp]	3.0	0.9668
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	3.0	0.9775
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	3.2	0.9715
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	3.5	0.9637
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	3.7	0.9672
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034624 [exp]	6.5	0.9689
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	6.6	0.9757
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10001664 [exp]	8.0	0.9669

Compare expression of checked genes

Lus10031850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.