Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18330 188 / 5e-56 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT3G10113 167 / 3e-48 MYB Homeodomain-like superfamily protein (.1) AT5G17300 158 / 2e-44 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 129 / 3e-34 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT2G46830 125 / 5e-31 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G01060 121 / 1e-29 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT3G09600 102 / 1e-24 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G52660 100 / 2e-23 MYB Homeodomain-like superfamily protein (.1.2) AT4G01280 99 / 3e-23 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 98 / 7e-23 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031322 [exp] 687 / 0 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10026365 [exp] 335 / 2e-112 AT1G18330 193 / 6e-58 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10042292 [exp] 329 / 7e-110 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10030184 [exp] 125 / 9e-32 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10005134 [exp] 125 / 9e-31 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 122 / 6e-30 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10027521 [exp] 101 / 4e-24 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 102 / 1e-23 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 102 / 2e-23 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030400 [exp] 236 / 4e-73 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 181 / 4e-52 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.012G038300 [exp] 181 / 5e-52 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.017G144800 [exp] 169 / 2e-47 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.014G106800 [exp] 122 / 7e-30 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.002G180800 [exp] 120 / 2e-29 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.006G133000 [exp] 103 / 2e-24 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 101 / 6e-24 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 100 / 5e-23 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 99 / 5e-23 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031893 pacid=23180635 polypeptide=Lus10031893 locus=Lus10031893.g ID=Lus10031893.BGIv1.0 annot-version=v1.0 ATGGCGGCTACTGCTTCTTCTCAGGATGGAATTCGGGAAGGTCGTCGTGATATGTCAGTTTCGGGAGGTGATTACTATGAGGACAACAACGACGGTGAGC AATTGATGGAGTTGAACTCATCTACGAGTCAGCATCTGCTCAAGGTGAGGAAACCGTACACCATCACTAAACAGAGGGAGAAATGGACAGACGAGGAACA CCAGAAGTTCCTTGATGCTCTGAAGCTGTATGGCCGCGGCTGGCGTAAGATTCAAGAACATGTAGGCACCAAAACTGCTGTACAAATTCGAAGCCATGCT CAGAAGTTCTTCTCCAAGGTGGTCCGAGAGACAACTGGCGGATCGGAGAACTCGATTAAGCCAACAGAGATCCCTCCTCCTCGTCCAAAGAGGAAACCTT TGCATCCTTACCCTCGCAAATGCACCGATGTCTCGAATCAATTCGAGACATCTCTGTCTCCCAATTTGTTGTGCATGGAGAAGGAAAGCCATTCCCCAAC ATCTCTCTCGACTGTGGTTCTCGAATCTCCAGTTTCAGAGGCCCTAAATAGGAGCTCTTCACTGATCTCATGCACCAGTGATGTCCAGTCCTCCAGCTTG CACCCTAATGAAAAGGAGAGCGAACCCATAGGATCAGACACGTCTCCACCCGGAAACTCGCCTTTATCACCTATAGGGTCATCGTCCAGTCCAATTGCGG AGAAATTGCCCATGGTGGACATTAAAAATGCAGCTTCTGCCAGCACCGTTGCAGTCTTGGCACCTTCCAGGAGCTTCAAGCTGTTTGGAAGGACGGTCTT GGTTACAGATTCTGAGAAGTATACGGAACTCGCCCTAAGCGTCAAGCTTTCGAACGGTTTGGTTAACCATGATTCGAGTAACCGGTTGGTATCAATCCAG CAGCACACATCAGTCCTTGAAGTTAAGAGAGAGGTCACGTGCTTCTCAGAAGCTGATTTCTCACTATCACCATGTGTGGAGGATGATACAAAACATAAAG AAGCTGTCGACGAAAGGTCTTGCACAGGCTCAGATGCCGGATCGACAAGTGAAATCGCCACCAGGGAAAGATCGATGGATGTCGGCGAGTCCCAATGCCA ACTTCCCTCTTCTCGAGCTAAGCTATCCGGCTCTATGAGCAATAGGGCCCGAGGGTTCATGCCTTACAAGAGGTGTTTAGCAGATAGGGATATGACATCG TCACTGGTTGCATCCGAAGAACGAGACCAGCAACGCGCTCGAATATGCTCTTAG
AA sequence Show only first row Show all	>Lus10031893 pacid=23180635 polypeptide=Lus10031893 locus=Lus10031893.g ID=Lus10031893.BGIv1.0 annot-version=v1.0 MAATASSQDGIREGRRDMSVSGGDYYEDNNDGEQLMELNSSTSQHLLKVRKPYTITKQREKWTDEEHQKFLDALKLYGRGWRKIQEHVGTKTAVQIRSHA QKFFSKVVRETTGGSENSIKPTEIPPPRPKRKPLHPYPRKCTDVSNQFETSLSPNLLCMEKESHSPTSLSTVVLESPVSEALNRSSSLISCTSDVQSSSL HPNEKESEPIGSDTSPPGNSPLSPIGSSSSPIAEKLPMVDIKNAASASTVAVLAPSRSFKLFGRTVLVTDSEKYTELALSVKLSNGLVNHDSSNRLVSIQ QHTSVLEVKREVTCFSEADFSLSPCVEDDTKHKEAVDERSCTGSDAGSTSEIATRERSMDVGESQCQLPSSRAKLSGSMSNRARGFMPYKRCLADRDMTS SLVASEERDQQRARICS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10113	MYB		Homeodomain-like superfamily p...		Lus10031893 [exp]	0	1
AT4G38960	CO		B-box type zinc finger family ...		Lus10035472 [exp]	2.8	0.8766
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10012804 [exp]	3.9	0.8932
AT1G29010			unknown protein		Lus10015398 [exp]	7.1	0.8135
					Lus10012672 [exp]	7.4	0.8266
AT3G14280			unknown protein		Lus10003937 [exp]	22.8	0.8359
					Lus10004451 [exp]	23.5	0.7865
					Lus10012313 [exp]	26.7	0.8403
AT1G09480			NAD(P)-binding Rossmann-fold s...		Lus10019734 [exp]	43.4	0.7512
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	48.6	0.8293
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10000354 [exp]	49.6	0.7994

Compare expression of checked genes

Lus10031893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.