Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 689 / 0 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 652 / 0 Transmembrane amino acid transporter family protein (.1) AT3G56200 372 / 6e-126 Transmembrane amino acid transporter family protein (.1) AT2G40420 355 / 5e-119 Transmembrane amino acid transporter family protein (.1) AT1G80510 345 / 2e-114 Transmembrane amino acid transporter family protein (.1) AT4G38250 88 / 1e-18 Transmembrane amino acid transporter family protein (.1) AT2G41190 76 / 2e-14 Transmembrane amino acid transporter family protein (.1) AT2G42005 75 / 2e-14 Transmembrane amino acid transporter family protein (.1) AT5G02180 57 / 1e-08 Transmembrane amino acid transporter family protein (.1) AT5G65990 53 / 2e-07 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035140 [exp] 917 / 0 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 811 / 0 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 808 / 0 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 570 / 0 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10007716 [exp] 545 / 0 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 532 / 0 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10042864 [exp] 397 / 4e-135 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 392 / 2e-133 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034093 [exp] 361 / 1e-120 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106300 [exp] 789 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 761 / 0 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 556 / 0 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 408 / 1e-139 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 379 / 4e-130 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.003G011900 [exp] 338 / 8e-112 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 332 / 3e-109 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G075500 [exp] 80 / 1e-17 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 77 / 3e-15 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 74 / 3e-14 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10031964 pacid=23161270 polypeptide=Lus10031964 locus=Lus10031964.g ID=Lus10031964.BGIv1.0 annot-version=v1.0 ATGACTGTTGGGAACACGTCTCCTAATAGGGGAAGGAAATCAAGGAAGGGGAAGCAGGTTGATGAGAATGCTCCTTTACTTCCCCATAGGAATGAGGAAG GTGGTTTCGATGAGTTCAATGGAGCTTCATTTCCAGGAGCTGTGTTTAATTTGTCGACCACAATAGTTGGTGCTGGGATCATGGCGTTGCCCGCCACCAT GAAGGTGTTAGGCCTTGTCCTTGGGATTGCCATGATCATCTTTATGGCATTCTTGACAGAGGCTTCGATTGAGTTATTGCTTAGGTTTAGCCGGGTAGGC AAGTCGGCATCTTATGGTGGACTTATGGGGGATGCCTTTGGTAAGGCTGGGAAAATTCTGTTGCAAGTTGCTGTGATGATCAACAACGTTGGTGTGCTCA TTGTTTACATGATAATCATAGGTGATGTACTATCTGGAACAACTGCTGATGGGGTTCATCACCCGGGTGTTCTCGAAGGATGGTTTGGAGAAGATTGGTG GAATGGACGCACCGCTGTACTTCTTATCACAACACTAGTTGTATTTTCTCCCCTGGCCTGTCTAAAGCGAATTGACTCTTTAAGATATACATCTGCACTC TCAGTTGCTCTTGCAGTAGTATTCATTGTCATCACCATGGGGATTACTATTGTCAAGTTGATAAATGGAAGCATAATGATGCCTAGATTGCTCCCTAATG TGACAGATTTGGCGTCATTCTGGAACCTCTTCACTGTTGTTCCTGTTCTTGTCACTGCATACATCTGTCACTACAACGTTCACAGCATAGACAATGAACT TAAGGATTCGAGTCAGATAAAGCCGGTGGTGCGAACATCACTTGCTCTGTGCTCATCGGTGTACATAATGACGAGTGTTTTTGGCTTCCTACTGTTTGGG GATTCAACGCTTGATGATGTGCTGGCCAACTTCAACACCGACCTCGGCATTCCTTATAGCTCACTCCTCAACGATGCTGTTCGCGTCAGTTATGCAGCTC ATCTCATGCTCGTGTTTCCAATCGTCTTCCACCCTTTACGGCTAAACATGGACGGGCTACTATTTCCCTCATCTCGGCCGTTATATCAGGACAACTTCCG GTTCGCATCAGTCACCATTGGTCTCATCTCCATAATCTTCCTGGGTGCAAATTTCATCCCAAGCATATGGGATGCGTTCCAGTTCACGGGGGCAACAGCA GCTGTTTGCCTCGGATTCATTTTCCCTGCATCCATTACTCTCAGGGACAGACACTATATAGCAACGTCGAAGGACAAGCTGTTGTGCGTGTTTATGATTG TACTTGCAGTGGTCTCAAATTTAGTAGCCATATACAGTGATGCATATGCATTGATGAAGAAGGACTCATCGCCCAATGCTGCATGA
AA sequence Show only first row Show all	>Lus10031964 pacid=23161270 polypeptide=Lus10031964 locus=Lus10031964.g ID=Lus10031964.BGIv1.0 annot-version=v1.0 MTVGNTSPNRGRKSRKGKQVDENAPLLPHRNEEGGFDEFNGASFPGAVFNLSTTIVGAGIMALPATMKVLGLVLGIAMIIFMAFLTEASIELLLRFSRVG KSASYGGLMGDAFGKAGKILLQVAVMINNVGVLIVYMIIIGDVLSGTTADGVHHPGVLEGWFGEDWWNGRTAVLLITTLVVFSPLACLKRIDSLRYTSAL SVALAVVFIVITMGITIVKLINGSIMMPRLLPNVTDLASFWNLFTVVPVLVTAYICHYNVHSIDNELKDSSQIKPVVRTSLALCSSVYIMTSVFGFLLFG DSTLDDVLANFNTDLGIPYSSLLNDAVRVSYAAHLMLVFPIVFHPLRLNMDGLLFPSSRPLYQDNFRFASVTIGLISIIFLGANFIPSIWDAFQFTGATA AVCLGFIFPASITLRDRHYIATSKDKLLCVFMIVLAVVSNLVAIYSDAYALMKKDSSPNAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	1.4	0.9624
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	2.0	0.9528
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	2.6	0.9664
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	2.8	0.9474
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	4.2	0.9555
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	6.3	0.9368
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	6.9	0.9355
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	8.7	0.9520
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	8.9	0.9433
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	9.9	0.9430

Compare expression of checked genes

Lus10031964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.