Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 270 / 1e-79 transmembrane receptors;ATP binding (.1.2) AT1G27180 267 / 1e-78 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72890 249 / 1e-77 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT3G04220 259 / 2e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 258 / 3e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G56510 259 / 5e-77 ADR2, WRR4 WHITE RUST RESISTANCE 4, ACTIVATED DISEASE RESISTANCE 2, Disease resistance protein (TIR-NBS-LRR class) (.1) AT1G64070 259 / 6e-77 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 257 / 7e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G14370 255 / 1e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 257 / 2e-75 disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015453 [exp] 729 / 0 AT1G27170 282 / 5e-84 transmembrane receptors;ATP binding (.1.2) Lus10014582 [exp] 500 / 7e-178 AT1G27170 186 / 9e-56 transmembrane receptors;ATP binding (.1.2) Lus10001375 [exp] 510 / 1e-167 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 488 / 2e-161 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 470 / 1e-153 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 462 / 3e-150 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 461 / 4e-149 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 451 / 8e-148 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 455 / 5e-147 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021681 [exp] 380 / 7e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 363 / 7e-121 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 378 / 3e-120 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 361 / 6e-120 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 359 / 1e-119 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 370 / 7e-119 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 370 / 8e-119 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 374 / 2e-118 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 360 / 2e-118 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 370 / 2e-117 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10032101 pacid=23161192 polypeptide=Lus10032101 locus=Lus10032101.g ID=Lus10032101.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAAATAATATCATGGTGGATTTGGCCTCTTTCAGCTCTCGCATTCATTCTCCCATTAGCAATTCTCTTCTTCTCCAAACAATTATCTACCA CCTCAACTCCAGAAGAACCTTCATCATCACTATCCTCTGATGAATTCCCATCTCCTTCTTCAGATCTCCCAGTAGGCGAATACGAAGTGTTCCTAAGCTT CCGAGGTCCCGACACTCGCCTGACCTTCACTGATTTCCTCTACACCTACCTCGTCCAGGCCAAAATCCGCACTTTCAGGGACGACGATGAGCTCCGGAAA GGTGGCACCATTGGCCCTGAGCTCATCAAGGCCATTCAAGAGTCTAAGATCGGGATCCCTATCTTCTCCCCAAACTACGCCTCCAGCAAATGGTGCCTTC AAGAGCTCGCCGAAATGGTTCGCTGCAAGAGAAACAAAGGCCAGATCATTCTTCCTGTCTTCTACTACGTCGACCCTACCGACGTCCGTCATCAGACGGG AACTTACAAACAGGCGTTTCAACAGCACGATAAGAAATTCAGCAAGGAGACTGTAGATCAATGGAGGTCTGCTTTGGCTGAGGTTGGCGCTTCGAAAGGA TGGGTTGTCAAGGATTCTAATGGCCAAGGAGCTACAATAGAGAATGTTTTCTCAGCGGTATGGTCAGCACTGAGGAGCGAGTACTTGCTAGTCACTGATG CTTTGGTCGGAATCGATCATCACGTAGACGAAATGATGAAACTTCTGGATCCAGAGGACTCCACCAACGATGTCAAAATCGTCGGAATCCACGGTGTGGC TGGGATCGGCAAGACCACCATAGCCAAGGCAGTCTACAACAGGCTCTTTCACAAGTTCGACCATTGCTGCTTTCTCGAAGACATACGCGAAACGTCACAA GAACACGGGGGAATCGTCAAGTTACAAAACAAGCTCGTCTCCAGCATTCTGAAGATGGAATCATCCGGCCTAGTCGAGAATGTCAGCCAAGGAATCTACC TGATAAGAAACAGAGTTTGCAAGCATAAAGTTCTGATAGTTGTTGATGATGTTGATAGAAAGTTTGAGTTTGATAAGGTGATAGGACACAGGGAATGGTT CTCGCCCGGGAGCAGGATTATTATCACGACGAGAGACAGAAAGGTTCTTAATATGCTTAACGTTCGTGAGGTGTATGAACCGTCGGTGATGAGTGCAGAA CATTCTCTGCAACTTTTCTGCAAGCATGCGTTTGGAATGGATTCTCCTCCAGAAGAGTATGCAGAACTATCCAAGGATATTGTATTGGCTGTGGGGGGTG TTCCTTTAGCTCTTAAGGATGTGGGTTCGAGTTTGTTTGGAGATGGTAGACAAGTGTGGGAAGAGACATTGATGAAGTTGAGAGACAACGATAAGCTTAC GAGCTAG
AA sequence Show only first row Show all	>Lus10032101 pacid=23161192 polypeptide=Lus10032101 locus=Lus10032101.g ID=Lus10032101.BGIv1.0 annot-version=v1.0 MEQQIISWWIWPLSALAFILPLAILFFSKQLSTTSTPEEPSSSLSSDEFPSPSSDLPVGEYEVFLSFRGPDTRLTFTDFLYTYLVQAKIRTFRDDDELRK GGTIGPELIKAIQESKIGIPIFSPNYASSKWCLQELAEMVRCKRNKGQIILPVFYYVDPTDVRHQTGTYKQAFQQHDKKFSKETVDQWRSALAEVGASKG WVVKDSNGQGATIENVFSAVWSALRSEYLLVTDALVGIDHHVDEMMKLLDPEDSTNDVKIVGIHGVAGIGKTTIAKAVYNRLFHKFDHCCFLEDIRETSQ EHGGIVKLQNKLVSSILKMESSGLVENVSQGIYLIRNRVCKHKVLIVVDDVDRKFEFDKVIGHREWFSPGSRIIITTRDRKVLNMLNVREVYEPSVMSAE HSLQLFCKHAFGMDSPPEEYAELSKDIVLAVGGVPLALKDVGSSLFGDGRQVWEETLMKLRDNDKLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10032101 [exp]	0	1
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	1.0	0.9006
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10023326 [exp]	3.9	0.8805
					Lus10014171 [exp]	5.1	0.8967
AT1G02630			Nucleoside transporter family ...		Lus10002167 [exp]	8.9	0.8712
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10019842 [exp]	12.0	0.8577
AT4G16400			unknown protein		Lus10039068 [exp]	12.0	0.8907
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	13.6	0.8764
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	15.7	0.8385
AT1G11570		NTL	NTF2-like (.1.2)		Lus10020061 [exp]	16.1	0.8767
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	18.8	0.8898

Compare expression of checked genes

Lus10032101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.