Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14345 140 / 4e-43 AtENODL21 early nodulin-like protein 21 (.1) AT1G48940 134 / 4e-40 AtENODL6 early nodulin-like protein 6 (.1) AT3G18590 133 / 1e-39 AtENODL5 early nodulin-like protein 5 (.1) AT1G79800 115 / 1e-32 AtENODL7 early nodulin-like protein 7 (.1) AT4G28365 103 / 6e-28 AtENODL3 early nodulin-like protein 3 (.1) AT2G25060 101 / 3e-27 AtENODL14 early nodulin-like protein 14 (.1) AT4G31840 99 / 1e-26 AtENODL15 early nodulin-like protein 15 (.1) AT3G20570 94 / 2e-24 AtENODL9 early nodulin-like protein 9 (.1) AT4G32490 92 / 3e-23 AtENODL4 early nodulin-like protein 4 (.1) AT4G30590 91 / 4e-23 AtENODL12 early nodulin-like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022318 [exp] 212 / 1e-70 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10014880 [exp] 205 / 7e-68 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10014575 [exp] 180 / 1e-53 AT5G40640 714 / 0.0 unknown protein Lus10009617 [exp] 124 / 5e-36 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1) Lus10011158 [exp] 100 / 1e-26 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 99 / 4e-26 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10039852 [exp] 94 / 4e-24 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10026880 [exp] 94 / 4e-24 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10018617 [exp] 94 / 5e-24 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338800 [exp] 177 / 2e-57 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.015G052000 [exp] 135 / 7e-41 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.015G113300 [exp] 124 / 9e-37 AT5G14345 110 / 9e-32 early nodulin-like protein 21 (.1) Potri.015G114600 [exp] 117 / 1e-33 AT5G14345 97 / 2e-26 early nodulin-like protein 21 (.1) Potri.003G050500 [exp] 107 / 2e-29 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.006G264600 [exp] 105 / 6e-29 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.018G018200 [exp] 102 / 9e-28 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.001G187700 [exp] 100 / 1e-26 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.006G184100 [exp] 98 / 6e-26 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.011G135400 [exp] 98 / 1e-25 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10032111 pacid=23161176 polypeptide=Lus10032111 locus=Lus10032111.g ID=Lus10032111.BGIv1.0 annot-version=v1.0 ATGGATTCATCAAAGCTCATACTCTTGTTGATGCTGTTGTCTACTACAACAGTTCATTCATTTGACCACCAAGTTGGTGGATCCAAAGGCTGGATTGTTC CTCCTTCCAACGACACCAAATTCTACAATGAGTGGGCTTCTCAGAACAGATTCCTCATTGGTGACACAGTCAGGTTTAGGTACAAGAAGGATTCGGTTAT GGAGGTGAATGAGGAAGGTTACAAGAGCTGCAACTCCAGCCATCCAAACTACTTCTCCAACACTGGAAACACGGTCTACGAGCTGGATCATTCTGGGCTG TACTACTTCATCAGCGGAGCTTCTCACCATTGCGACAAAGGGCAGAAGATGATCATCAAGGTCTTGAGTCATGAAGACGATGACAATGGCAATGGCACTA GCAAGACTCCTCCTTCCCATGACGGCGAAGGTGGTCACAGCAAGTCAGCAGCTGGTTCAACTCTTCCTTCTTCAGTTTTGGCCATGGCTATAGCAACTCT TGCTGCTTCCATCTACTATTAG
AA sequence Show only first row Show all	>Lus10032111 pacid=23161176 polypeptide=Lus10032111 locus=Lus10032111.g ID=Lus10032111.BGIv1.0 annot-version=v1.0 MDSSKLILLLMLLSTTTVHSFDHQVGGSKGWIVPPSNDTKFYNEWASQNRFLIGDTVRFRYKKDSVMEVNEEGYKSCNSSHPNYFSNTGNTVYELDHSGL YYFISGASHHCDKGQKMIIKVLSHEDDDNGNGTSKTPPSHDGEGGHSKSAAGSTLPSSVLAMAIATLAASIYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Lus10032111 [exp]	0	1
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	6.3	0.9012
AT3G01490			Protein kinase superfamily pro...		Lus10030621 [exp]	11.0	0.7309
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016175 [exp]	12.3	0.8757
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	18.4	0.7385
AT1G30050			unknown protein		Lus10035609 [exp]	18.5	0.8651
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	21.4	0.8638
AT4G26330		ATSBT3.18, UNE1...	UNFERTILIZED EMBRYO SAC 17, Su...		Lus10029569 [exp]	23.3	0.6735
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	23.6	0.8616
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019320 [exp]	24.2	0.7042
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	26.5	0.8575

Compare expression of checked genes

Lus10032111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.