Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14340 238 / 2e-78 MYB AtMYB40 myb domain protein 40 (.1) AT5G16600 224 / 8e-72 MYB ATMYB43 myb domain protein 43 (.1) AT1G66230 217 / 8e-70 MYB ATMYB20 myb domain protein 20 (.1) AT4G22680 208 / 1e-66 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 204 / 7e-65 MYB ATMYB42 myb domain protein 42 (.1) AT3G02940 193 / 6e-60 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 192 / 3e-59 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G61250 190 / 4e-59 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G26660 191 / 1e-58 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G28110 188 / 1e-58 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014569 [exp] 411 / 3e-146 AT5G14340 239 / 7e-79 myb domain protein 40 (.1) Lus10004043 [exp] 216 / 2e-68 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10024589 [exp] 213 / 6e-68 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10032226 [exp] 213 / 6e-68 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10027197 [exp] 211 / 9e-68 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10038913 [exp] 210 / 1e-67 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10002296 [exp] 213 / 3e-67 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004042 [exp] 208 / 2e-65 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10010974 [exp] 194 / 9e-62 AT5G16600 215 / 8e-70 myb domain protein 43 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336700 [exp] 255 / 1e-84 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.008G180800 [exp] 231 / 2e-75 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.004G086300 [exp] 220 / 2e-70 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.003G114100 [exp] 216 / 1e-69 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.001G118800 [exp] 216 / 2e-69 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.017G130300 [exp] 216 / 5e-69 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.012G127700 [exp] 205 / 2e-65 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.015G129100 [exp] 205 / 4e-65 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.019G118200 [exp] 192 / 5e-59 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.002G096800 [exp] 190 / 1e-58 AT1G34670 305 / 2e-102 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032117 pacid=23161226 polypeptide=Lus10032117 locus=Lus10032117.g ID=Lus10032117.BGIv1.0 annot-version=v1.0 ATGGGAAGACAACCCTGTTGTGAAAAGGTTGGATTGAAGAGAGGTCCATGGACCATTGAAGAAGACCACAAGCTCATGAACTTCATCCTCAACAATGGCA TCCATTGCTGGAGAATGGTCCCTAAGCTTGCAGGTTTGCTAAGGTGCGGGAAGAGTTGTAGGTTGAGATGGATTAATTACTTGAGGCCAGATCTTAAGAG AGGTGCTTTCACTGAAGCTGAGGAGAATCAGATGATTCAGCTCCATTGCCGCCTTGGAAACAGGTGGTCAAAGATTGCCTCGCATTTACCTGGAAGGACG GACAACGAGATCAAAAATCATTGGAACACTAGGATAAAGAGGAAACTTAAGTTGGCTGGAGTAGACCCTGTCACCCACCAACCGATTCTCGATAACACTA ACACAAAGGGTGGTGATCGGGATGATCAGAAGAAGCAGAAGCTAGAAGAGGAATTAGAGTTATCGACGATGACGACAAAATTGGACGAAATTACAACTAT TAATGATGATAATGATGATCCACTGAGGAGGGACTATCAAGTGTTTGGTGGAAGCAGCTTGGAGTACTTTGGGGGACATAATAAAAGTAGTAACACAAGT ACTACTTCTCAGGGTTCGACAATATCATCATCGATTGAGGAATCGAATTCGAATAATAACTACAATTATCATCGAGGTATCAATCACGAACCGGTAGTAG TCTCGAACACTCAATTTGACGATTATGATACTTTGAAACAATGGGTTGATGGGGTAGACTCATCAATGTTCTCTTGGGATGATGGTTTCATGAATGGTAA CCTAGACGATGATTTTTTCCTTCATGGGAAATGGACATTACTGTAA
AA sequence Show only first row Show all	>Lus10032117 pacid=23161226 polypeptide=Lus10032117 locus=Lus10032117.g ID=Lus10032117.BGIv1.0 annot-version=v1.0 MGRQPCCEKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEAEENQMIQLHCRLGNRWSKIASHLPGRT DNEIKNHWNTRIKRKLKLAGVDPVTHQPILDNTNTKGGDRDDQKKQKLEEELELSTMTTKLDEITTINDDNDDPLRRDYQVFGGSSLEYFGGHNKSSNTS TTSQGSTISSSIEESNSNNNYNYHRGINHEPVVVSNTQFDDYDTLKQWVDGVDSSMFSWDDGFMNGNLDDDFFLHGKWTLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	0	1
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	1.0	0.9499
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10005078 [exp]	1.4	0.9448
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	2.8	0.9170
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	3.2	0.9246
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	3.5	0.9270
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	5.3	0.9204
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	6.2	0.9115
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10016139 [exp]	7.5	0.9271
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	8.8	0.9217
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	9.9	0.9112

Compare expression of checked genes

Lus10032117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.