Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40350 211 / 2e-69 MYB ATMYB24 myb domain protein 24 (.1) AT3G27810 205 / 5e-67 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT3G01530 197 / 3e-64 MYB ATMYB57 myb domain protein 57 (.1) AT1G48000 178 / 3e-56 MYB ATMYB112 myb domain protein 112 (.1) AT2G47190 178 / 1e-55 MYB AtMYB2 myb domain protein 2 (.1) AT1G68320 177 / 2e-55 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 177 / 3e-55 MYB ATMYB116 myb domain protein 116 (.1.2) AT5G49620 169 / 1e-51 MYB ATMYB78 myb domain protein 78 (.1.2) AT3G06490 164 / 2e-49 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT3G24310 161 / 3e-49 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014557 [exp] 334 / 5e-118 AT5G40350 224 / 1e-74 myb domain protein 24 (.1) Lus10022259 [exp] 218 / 7e-72 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10037818 [exp] 189 / 2e-59 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10017096 [exp] 186 / 6e-59 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10038062 [exp] 179 / 6e-56 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10041435 [exp] 180 / 1e-55 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009996 [exp] 177 / 2e-55 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10034338 [exp] 177 / 1e-54 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009037 [exp] 169 / 1e-52 AT1G68320 231 / 1e-75 myb domain protein 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346600 [exp] 210 / 2e-69 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.017G071500 [exp] 208 / 8e-69 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G101400 [exp] 191 / 3e-60 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 189 / 2e-59 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.012G055600 [exp] 182 / 6e-57 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.015G046200 [exp] 182 / 1e-56 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.008G122100 [exp] 177 / 5e-55 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.010G123000 [exp] 172 / 9e-53 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.014G117000 [exp] 164 / 5e-50 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.002G191800 [exp] 163 / 8e-50 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032129 pacid=23161241 polypeptide=Lus10032129 locus=Lus10032129.g ID=Lus10032129.BGIv1.0 annot-version=v1.0 ATGGAGTGCAGAACCAATCAGCCGTCAAAGGAAGCCACCGGCGGCGGAGGTGAAGGTATAAGGAAAGGGCCGTGGACGATGGAGGAAGACTTGATACTGA TCAACTATATTGCCAACCACGGCGAAGGTGTCTGGAACTCTCTGGCTCTCTCGGCAGGCCTGAAGCGTACCGGGAAGAGTTGCAGGCTGAGATGGTTGAA TTACTTGCGTCCTGATGTGAGGAGAGGCAACATCACTCTCGAGGAGCAGATCCTCATCATGGATCTCCATTCCAAGTGGGGAAATAGGTGGTCGAAAATT GCAAAGCATCTCCCAGGAAGAACGGACAACGAGATAAAAAACTATTGGCGAACCAGGATCCAAAAGCATCTTAAGCCATCCAAACTACAGTCCTCGTCTC CTCCGAGTTCAGGGGTGGATCACCACCACCAGCTAGACACAAGTCACACAAGCCAGCTCGTTTCGGGATACAACCACTACTACCATGGAGCTGATCCCAT GGAAGCCATGATGGTTGCGGAGTGTTCCGGTTCGAACACGACGCAGTCGGACCAGCACTCGTCCTTTGAGGGACGTCACTGGAGCATGGAGGAGTTGTGG TCTATGGAGCTGTTCAATGCAGGGTCTTAA
AA sequence Show only first row Show all	>Lus10032129 pacid=23161241 polypeptide=Lus10032129 locus=Lus10032129.g ID=Lus10032129.BGIv1.0 annot-version=v1.0 MECRTNQPSKEATGGGGEGIRKGPWTMEEDLILINYIANHGEGVWNSLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQILIMDLHSKWGNRWSKI AKHLPGRTDNEIKNYWRTRIQKHLKPSKLQSSSPPSSGVDHHHQLDTSHTSQLVSGYNHYYHGADPMEAMMVAECSGSNTTQSDQHSSFEGRHWSMEELW SMELFNAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	3.7	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	5.3	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	6.5	1.0000
					Lus10024141 [exp]	7.5	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	8.4	1.0000
					Lus10013255 [exp]	9.2	1.0000
					Lus10013259 [exp]	9.9	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	10.6	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	11.2	1.0000
					Lus10028570 [exp]	11.8	1.0000

Compare expression of checked genes

Lus10032129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.