Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14880 561 / 0 Potassium transporter family protein (.1) AT1G70300 543 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT2G40540 476 / 1e-158 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT2G30070 386 / 6e-125 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 355 / 3e-112 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT4G13420 330 / 1e-102 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT3G02050 323 / 7e-100 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT1G60160 318 / 7e-98 Potassium transporter family protein (.1) AT1G31120 303 / 2e-92 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 298 / 1e-90 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012888 [exp] 741 / 0 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10029050 [exp] 729 / 0 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10014531 [exp] 688 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10030632 [exp] 560 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030857 [exp] 560 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10024709 [exp] 523 / 9e-178 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Lus10032327 [exp] 521 / 5e-176 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10012992 [exp] 503 / 2e-169 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10034215 [exp] 476 / 1e-156 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147400 [exp] 548 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.010G094300 [exp] 545 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 506 / 1e-170 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 473 / 2e-157 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.009G073500 [exp] 396 / 4e-128 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G144900 [exp] 376 / 2e-120 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 370 / 1e-117 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.003G148200 [exp] 368 / 1e-117 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 364 / 2e-116 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.001G069650 [exp] 340 / 3e-106 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10032154 pacid=23161246 polypeptide=Lus10032154 locus=Lus10032154.g ID=Lus10032154.BGIv1.0 annot-version=v1.0 ATGGACCTCGAAAGCATCGAACTTTCCCGTAACCCAATCAAGAGAGAGTCATGGAGGGCAGTTCTGACGCTAGCGTACCAGAGCTTGGGAGTGGTCTACG GAGATTTGAGCACTTCACCTTTGTACGTTTACAAGAGCACATTCGCGGAGGACATCAAGCATTCCGACACCAACGAGGAAATCTTCGGGGTGCTTTCTTT CGTTGTCTGGACGCTTACTTTAATCCCGCTTCTTAAATATGTGTTCATTGTTCTTAGAGCTGATGATAATGGGGAAGGTGGTACTTTTGCTCTGTATTCC CTGCTCTGCCGTCATGCTCGTGTCACTACTCTGCCCAATTGCCAGCTGGCGGATGAACAGTTGTCTGAGTATAATCGAGATGATGGCAGTAGGAATGGAC GACGAATTGGGTCTGGATTGAAATCTGCTTTGGAGAAGAGTAGATTGTTGCAGAAAGGGTTGCTGGTTTTGGCTTTGATTGGGACTTCTATGGTCATTGG CGATGGAGTTCTTACACCTGCAATTTCTGTTTCTTCGGCTGTTTCTGGGATGGAGCTTTCAATGGCCAAAGAGCAGCACCAGTATATCAAGCTGCCAGTT ACTTGTGCAATACTTGTATCTTTGTTTGCCCTCCAGCACTTTGGAACTCACAAAGTCGGGTTCCTATTCGCACCTATTGTCATCGTGTGGCTGCTATGCA TCAGTAGCATCGGCGTGTACAATATTTTCTACTGGAATCCACTTGTTTACCAAGCTCTCTCCCCATACTACATGTACAAGTTTTTGAAGAAAACGAAGAA GGGAGGGTGGATGTCATTAGGAGGAATTCTGCTCTGCATGACTGGCTCAGAAGCAATGTTTGCTGATTTGGGACACTTCTCTCAATTATCCATCCAGATT GCTTTCACTTTCGTTGTTTACCCATCACTGATCCTTGCATACATGGGACAAGCTGCTTACCTTTCCAAGCATCACATTCTCGAAACTGATTACCGAATTG GGTTTTATGTATCTGTTCCAGCCTCCCTCATCAAGTTCCTTGATGGAGCTTGGGTTCCCATTGCCCTCTCACTCATCTTCCTGGCCATAATGTACATCTG GCACTATGGAACCTTGAAGAGGTATGAATCGGATGTTCAAAACAAGGTCTCGATCAACTGGCTCCTCAGCCTAGGTCCGACATTAGGCATAGTTCGGGTT CGAGGCATAGGGCTAATACACACAGAACTCGTCTCTGGCATCCCGGCCATGTTCTCTCACTTTGTCACCAACCTCCCTGCTTTCCACCAAGTCGTAGTCT TCTTATGCGTAAAATCGGTTCCCGTGCCTCATGTGGGACCCCAGGAACGATTCCTTGTGGGAAGAGTTGGACCGAAGGAATACCGCATCTACAGATGCAT AGCACGGTATGGATACCACGACGTTCACAAGGATGACGTGGAGTTCGAGAGGGACCTTGTTTGTAGCATTGCAGAGTTCATCAGGTCCGAAAAGCAGAAG ACAAGCTTAAGCTTAGATGACACGGAGGAATTCGAGGATTACGATGAGAGAATGGCTGTGATTGGTACGACATCATCGAACCTAGAAGGGATACAGTTGC ATGTGGAAGAAGAAGAAAAAGAAGAAGATGAAGAAGAAGCAACATGTTCGAATGTGGTGGCAGTGAAGTCTCCGGAGAGGATGCCGAGAAGGAGGAGAGT GAGGTTTATTGTGCCGGAGACCGTTGGAATCGACAGAGAGGCACAAGAGGAGCTTGATGAGCTGATGGAAGCCAGGGAATCTGGGTTGGCGTTCATACTG GGGCATTCATACGTGAGGGCGAAGAGCGGTTCGAGTTTGATTAGGAAGTTCGTGATAAACTATGGGTATGATTGTTTGAGGAGGAATTCCAGGGGACCAA GTTATGGATTGTCCATTCCTTATGCATCTACATTAGAGGTGGGAATGGTGTATCATGTGTAG
AA sequence Show only first row Show all	>Lus10032154 pacid=23161246 polypeptide=Lus10032154 locus=Lus10032154.g ID=Lus10032154.BGIv1.0 annot-version=v1.0 MDLESIELSRNPIKRESWRAVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIKHSDTNEEIFGVLSFVVWTLTLIPLLKYVFIVLRADDNGEGGTFALYS LLCRHARVTTLPNCQLADEQLSEYNRDDGSRNGRRIGSGLKSALEKSRLLQKGLLVLALIGTSMVIGDGVLTPAISVSSAVSGMELSMAKEQHQYIKLPV TCAILVSLFALQHFGTHKVGFLFAPIVIVWLLCISSIGVYNIFYWNPLVYQALSPYYMYKFLKKTKKGGWMSLGGILLCMTGSEAMFADLGHFSQLSIQI AFTFVVYPSLILAYMGQAAYLSKHHILETDYRIGFYVSVPASLIKFLDGAWVPIALSLIFLAIMYIWHYGTLKRYESDVQNKVSINWLLSLGPTLGIVRV RGIGLIHTELVSGIPAMFSHFVTNLPAFHQVVVFLCVKSVPVPHVGPQERFLVGRVGPKEYRIYRCIARYGYHDVHKDDVEFERDLVCSIAEFIRSEKQK TSLSLDDTEEFEDYDERMAVIGTTSSNLEGIQLHVEEEEKEEDEEEATCSNVVAVKSPERMPRRRRVRFIVPETVGIDREAQEELDELMEARESGLAFIL GHSYVRAKSGSSLIRKFVINYGYDCLRRNSRGPSYGLSIPYASTLEVGMVYHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032154 [exp]	0	1
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	1.7	0.9514
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	2.8	0.9473
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10013117 [exp]	7.5	0.9222
					Lus10006006 [exp]	8.4	0.9257
AT4G32190			Myosin heavy chain-related pro...		Lus10006190 [exp]	8.5	0.9286
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	8.8	0.9259
AT3G30390			Transmembrane amino acid trans...		Lus10005099 [exp]	9.4	0.8782
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	9.5	0.9309
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	10.7	0.9280
AT5G47040		LON2	lon protease 2 (.1)		Lus10001083 [exp]	12.6	0.9066

Compare expression of checked genes

Lus10032154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.