Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 489 / 4e-170 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 450 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 432 / 2e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 400 / 3e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28610 362 / 8e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 359 / 1e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 355 / 3e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 350 / 5e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 333 / 6e-110 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 307 / 5e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014496 [exp] 895 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 496 / 7e-173 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 471 / 4e-163 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 447 / 3e-153 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 445 / 6e-153 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 441 / 5e-151 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014497 [exp] 402 / 3e-136 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005256 [exp] 404 / 2e-134 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 397 / 5e-134 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047950 [exp] 626 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 619 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 606 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 593 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 522 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 485 / 7e-169 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 472 / 7e-164 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 470 / 4e-163 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 470 / 4e-163 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 431 / 2e-149 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10032188 pacid=23161247 polypeptide=Lus10032188 locus=Lus10032188.g ID=Lus10032188.BGIv1.0 annot-version=v1.0 ATGATTAATTCAGCAAGTTTGAAGCAAGGACTGGAAGAGAGCATAGGAAGCGGAAGAGGGTTTACCAGGATGAAGGCAGGGGATGCTTTTGCTCAGCTGG GATCGATAATCGCCAGTCTGATGTTCGTCTGGGCAATGTTTCAGCAGTACTTCCCTTACCAACTCCGCCACAACATAGAGAAGTACTCTCAGAGGGTCTT CTCCTTCGTCTACCCTTACATTCAGATCACTTTCAATGAATTCACAGGCGAGCGGTTGATGCGCAGCGAGCTCCACTCCGCCATCGAGAACTACCTCAGC TCCAATTCGTCCATGCAAGCCAAGCGGCTCAAGGCTGACATACTGAAGAACAACCAGTCTCTGGTGTTAAGCATGGATGACCATGAAGAGGTTGCTGATG AATTCCAAGGAATCAAGATGTGGTGGGCTTCTGGGAAGAACATATCCAAAGCGCAGACGCTGTCTTTCTATCCAACTACTGATGAGAAAAGGTATTACAA GCTGACTTTTCACAAGCAGCATAGAAATCTAGTCATTGGACCGTATTTGAGCCATGTCCTGAAAGAAGGTAGAGCAATTAAGGTTAAGAATCGGCAGCGG AAGCTGTATACCAACAACGGATCACACTGGAGCCATGTAATGTTTGAGCATCCGGCGACGTTTGAAACATTGGGGATGGAGGCAGAGAAGAAGAAGGAGA TTCTTGAAGACTTGATCACGTTTAGCCAAGCGGAAGAGTTTTATGCGAGAATTGGAAGAGCTTGGAAGAGAGGTTACCTTCTCTATGGCCCTCCCGGTAC CGGGAAGTCAACGATGATCGCAGCCATAGCGAATCTTCTGAACTACGATATCTACGACCTTGAATTAACCGCCGTGAAGGATAACACTGAGCTGAGGAAG CTTCTGATCGAGACGTCCAGCAAATCCGTGGTTGTGATTGAGGACATCGATTGCTCTCTTGACCTTACCGGCCAGCGAAGGAAGACGAACGAGAAGGATG AAGCAACAGACGACAAAGATCAGAAGCCGAAGCAGCCGAAGGAAGATAGAGAGGCCAAACCAAGCCAGGTGACTCTTTCTGGACTGTTGAACTTCATCGA CGGGCTATGGTCGGCTTGCGGCGGGGAGAGATTGATCGTCTTCACCACGAATCACAGTGTTGGCGAAGAACTACCTCCTGCTTCACGACCACCAACTGTT CGACAAAATTCGCCAGTTACTGCTGGAGACGAAGATGACTCCAGTGAGACGAAGATGTCTCCAGCTGACGTTGCAGAGCATTTGATGCCCAAGACCGTGC CGCCGAACCCTGAGGTTTGCTTGAATAGTCTGGTGGAGAGCCTTGAAGCTGCTCAAGAGGAAGCGAGGGAAAAGAACAGCGAGAAAGAAATCTCTGCCAT TGAAGAAAGGAAAGAAGAAAACAAGGAAGCACCTGGGAAAGACGAAAGCAAATACAAGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10032188 pacid=23161247 polypeptide=Lus10032188 locus=Lus10032188.g ID=Lus10032188.BGIv1.0 annot-version=v1.0 MINSASLKQGLEESIGSGRGFTRMKAGDAFAQLGSIIASLMFVWAMFQQYFPYQLRHNIEKYSQRVFSFVYPYIQITFNEFTGERLMRSELHSAIENYLS SNSSMQAKRLKADILKNNQSLVLSMDDHEEVADEFQGIKMWWASGKNISKAQTLSFYPTTDEKRYYKLTFHKQHRNLVIGPYLSHVLKEGRAIKVKNRQR KLYTNNGSHWSHVMFEHPATFETLGMEAEKKKEILEDLITFSQAEEFYARIGRAWKRGYLLYGPPGTGKSTMIAAIANLLNYDIYDLELTAVKDNTELRK LLIETSSKSVVVIEDIDCSLDLTGQRRKTNEKDEATDDKDQKPKQPKEDREAKPSQVTLSGLLNFIDGLWSACGGERLIVFTTNHSVGEELPPASRPPTV RQNSPVTAGDEDDSSETKMSPADVAEHLMPKTVPPNPEVCLNSLVESLEAAQEEAREKNSEKEISAIEERKEENKEAPGKDESKYKQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	0	1
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	1.0	0.8995
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	1.7	0.8954
					Lus10010742 [exp]	2.8	0.8751
AT5G51040			unknown protein		Lus10043024 [exp]	3.5	0.8686
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	3.5	0.8980
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	5.3	0.8294
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	5.8	0.8273
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	6.7	0.8417
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	7.7	0.8694
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	7.9	0.8075

Compare expression of checked genes

Lus10032188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.