Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26770 148 / 3e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 147 / 9e-44 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 139 / 2e-41 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 139 / 5e-41 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 134 / 2e-39 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G03140 136 / 3e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 130 / 1e-37 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 128 / 8e-37 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 128 / 2e-36 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 125 / 7e-36 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021313 [exp] 356 / 4e-126 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 355 / 4e-126 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 353 / 2e-125 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 352 / 2e-124 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 352 / 2e-124 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 350 / 8e-124 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 349 / 2e-123 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 240 / 2e-80 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 224 / 4e-74 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 244 / 3e-82 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 239 / 3e-80 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 214 / 3e-70 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 211 / 3e-69 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 203 / 4e-66 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 194 / 2e-62 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 187 / 6e-60 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 187 / 9e-60 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 183 / 4e-58 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 182 / 6e-58 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032192 pacid=23161291 polypeptide=Lus10032192 locus=Lus10032192.g ID=Lus10032192.BGIv1.0 annot-version=v1.0 ATGTACAACAACGCCGGAATCGGAGGAAACTTGGACACCACGATCCTAAACTCGGACAACGCAGACTTCAAGCGAGTGCTGGAAATCAACCTGTTCGGAT CCTTCTTAGGAGCGAAACATGCCGCCAGGGTGATGATCCCGGCGAGGAAAGGTTGCATTCTGTTCACGGGAAGCGTGGCTGCTTCGATAAGCGGGGACTT GTCGTACGCATACAAGGCTTCGAAGCACGCGATTTTGGGGCTCAACAATAACTTGACTGTGGAGTTGGGGAAGTATGGGATTCGGGTGAACACGATTTCG CCATACGGAGTTGCGACTCCGATGGTGACAAGCGGAATGCAGATGGATAAGAAGGCTGCGGAGGAATTTATGTCGGCGGCAGGGAATTTGAGAGGTGCGG TTTTGGAACCTGAAGATGTTGCTAAGGCGGCGCTTTATTTGGCTAGTGATGATGCCAAGTACGTGAGTGGGCTGAATTTGATTGTGGATGGAGGTCACAA TCATAATCATCCACTCTTTGGCGCATCAGCTTAA
AA sequence Show only first row Show all	>Lus10032192 pacid=23161291 polypeptide=Lus10032192 locus=Lus10032192.g ID=Lus10032192.BGIv1.0 annot-version=v1.0 MYNNAGIGGNLDTTILNSDNADFKRVLEINLFGSFLGAKHAARVMIPARKGCILFTGSVAASISGDLSYAYKASKHAILGLNNNLTVELGKYGIRVNTIS PYGVATPMVTSGMQMDKKAAEEFMSAAGNLRGAVLEPEDVAKAALYLASDDAKYVSGLNLIVDGGHNHNHPLFGASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	0	1
AT4G37290			unknown protein		Lus10010255 [exp]	1.4	0.9979
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	2.0	0.9964
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	2.4	0.9943
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	2.8	0.9949
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	3.0	0.9962
					Lus10010257 [exp]	3.7	0.9940
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	4.9	0.9923
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	5.8	0.9909
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10015521 [exp]	5.9	0.9856
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	7.1	0.9935

Compare expression of checked genes

Lus10032192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.