Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12350 267 / 5e-89 MYB ATMYB42 myb domain protein 42 (.1) AT4G22680 258 / 1e-85 MYB ATMYB85 myb domain protein 85 (.1) AT1G66230 249 / 7e-82 MYB ATMYB20 myb domain protein 20 (.1) AT5G16600 241 / 2e-78 MYB ATMYB43 myb domain protein 43 (.1) AT5G62320 213 / 2e-68 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT5G14340 209 / 8e-67 MYB AtMYB40 myb domain protein 40 (.1) AT5G15310 209 / 6e-66 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G28110 208 / 7e-66 MYB ATMYB41 myb domain protein 41 (.1) AT3G02940 208 / 1e-65 MYB ATMYB107 myb domain protein 107 (.1) AT3G61250 206 / 6e-65 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024589 [exp] 445 / 1e-158 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10027197 [exp] 260 / 5e-87 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10038913 [exp] 255 / 5e-85 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10004043 [exp] 246 / 8e-80 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10002296 [exp] 244 / 4e-79 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004042 [exp] 224 / 2e-71 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10032117 [exp] 214 / 3e-68 AT5G14340 244 / 9e-81 myb domain protein 40 (.1) Lus10014569 [exp] 210 / 8e-67 AT5G14340 239 / 7e-79 myb domain protein 40 (.1) Lus10010974 [exp] 204 / 1e-65 AT5G16600 215 / 8e-70 myb domain protein 43 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118800 [exp] 312 / 4e-107 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.003G114100 [exp] 311 / 2e-106 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.012G127700 [exp] 264 / 7e-88 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.015G129100 [exp] 263 / 2e-87 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.004G086300 [exp] 247 / 1e-80 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.017G130300 [exp] 244 / 9e-80 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.001G336700 [exp] 218 / 8e-70 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.008G180800 [exp] 208 / 4e-66 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.004G033100 [exp] 208 / 8e-65 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 206 / 1e-64 AT1G34670 289 / 6e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032226 pacid=23168578 polypeptide=Lus10032226 locus=Lus10032226.g ID=Lus10032226.BGIv1.0 annot-version=v1.0 ATGGGAAGGCAGCCTTGTTGTGACAAGCTTGGGGTGAAGAAAGGGCCATGGACAGCTGAGGAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCC AGTGTTGCTGGAGGGCTGTCCCGAAGCTCGCGGGGCTTCGTCGTTGTGGGAAGAGTTGTCGTCTGCGGTGGACCAACTACCTTAGGCCGGACCTCAAGCG TGGCCTTCTTAATGATGCTGAGGAACAACTTGTTATTGACCTCCATGCCCGCCTTGGCAACCGGTGGTCCAAAATAGCTGCAAAGTTACCAGGAAGAACA GACAACGAAATAAAAAACCACTGGAACACACACATCAAGAAGAAGCTTTTGAAAATGGGGATCGATCCGGTGACCCACGAGCCACTCAACAAATCGGACA ATGATCATGATCAAACCAGCAACAGCCCGGATCATCAGGAACCCATACTCTCACCTCAGTCACAACAACAACCCCTGGCTAATCATGACAATGAAGAAGC ACTACTAATTAACTCGAAAACCGAGAACTCATCGAGCAACGACTCATCGTCCTCGTCCTCGTTGTCCTCCTCGTCATCATCGTCGATCCTCCTCGACAAC ATTTGCAATGATGATGCTTTGCTCAATAGCTTGTGGATGGTTGATCAGCCTCTCCTTGTTGATTCCTTCATTAACCCTACTCCTTCATCCCTCATTACCA CTCCTAATACTACTACTATTTGTAATAGTACTAGTACTAATGCTATTGGTACCAATTGGTATCCATCCTGGGAAGACAGCTGCTCATGGCTTTTGGACTG TCAGGACTTTGGGGTACATGATTTCGGGTTCGAAGACATCGATCTAACCGCGATTGGGTCGCTGGTTATGGAGGACAACCCAGTAGTAGTGAATGAGATG TTACAACAGTAG
AA sequence Show only first row Show all	>Lus10032226 pacid=23168578 polypeptide=Lus10032226 locus=Lus10032226.g ID=Lus10032226.BGIv1.0 annot-version=v1.0 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNDAEEQLVIDLHARLGNRWSKIAAKLPGRT DNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKSDNDHDQTSNSPDHQEPILSPQSQQQPLANHDNEEALLINSKTENSSSNDSSSSSSLSSSSSSSILLDN ICNDDALLNSLWMVDQPLLVDSFINPTPSSLITTPNTTTICNSTSTNAIGTNWYPSWEDSCSWLLDCQDFGVHDFGFEDIDLTAIGSLVMEDNPVVVNEM LQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	0	1
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	1.4	0.9824
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	2.2	0.9836
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10037376 [exp]	2.8	0.9767
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	3.5	0.9771
					Lus10017305 [exp]	3.7	0.9768
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	4.5	0.9775
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	4.9	0.9797
AT5G66120			3-dehydroquinate synthase, put...		Lus10041882 [exp]	5.8	0.9698
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	6.3	0.9785
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	6.3	0.9744

Compare expression of checked genes

Lus10032226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.