Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11410 426 / 4e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 389 / 2e-134 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 384 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 313 / 1e-104 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 298 / 1e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 236 / 1e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 228 / 2e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 206 / 8e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 106 / 3e-25 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 100 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028781 [exp] 503 / 2e-179 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 411 / 5e-143 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 410 / 8e-143 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 393 / 4e-136 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 385 / 9e-133 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035479 [exp] 386 / 1e-132 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 384 / 3e-132 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 382 / 8e-132 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10014975 [exp] 375 / 2e-128 AT4G23430 442 / 8e-157 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 421 / 4e-147 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 390 / 6e-135 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 378 / 3e-130 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 354 / 7e-121 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 352 / 4e-120 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 343 / 4e-116 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 319 / 7e-107 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 227 / 7e-71 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 227 / 7e-71 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 222 / 4e-69 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032280 pacid=23168505 polypeptide=Lus10032280 locus=Lus10032280.g ID=Lus10032280.BGIv1.0 annot-version=v1.0 ATGAAAGGAAGCGGCAGATCATCACCGTCGCCGTTGCCGTCGCCGGTAATCGGAGTCGGCAACAAGAACATCAAACCTCGTTTCTGGCCTGCACAAGACG ATACTAAGCCTCCACTCCAAGACCCAATTCGGAGGTCGGACCCTATTGATACGGAGGAGCCAGTGCTGCGATTGCCCCCCAATTTCCCACCTTCCAAGCA GCTCCTTAAGTGTTTGCTTGGTGCTATGAACTATGGGGATCCTATCGGGAACTCCATGCAGAAGCACTATAAAACTAAGGTGGGAAGGGAGGTTAAATGT AGTCTGGGAAAAATGTGGGTTTTCGGGTGGAAAGGTGAATCTGGATTCTCAGCTCGTTCAACTGCCGAAGAAGTTACCAGCGGGATCGATGGGACTGGCC TCACTGCCATTGTTACAGGAGCAACAAGTGGCCTTGGAATGGAGGCAACCCGCGTTCTAGCTCTACGAAGTGTTCATGTAGTGATGGCTGTAAGGGACGT TGATGCTGGTTATGAAGTCAGGCGTTCAATAATCGAGGGAATCCCGAACGCCAAGCTTGGTGTCATGAAGTTAGATCTGAGCTCATTGGCATCGGTCCGG GAATTCGCGTCTGATTTCATCTCCAGGGGCCTTCCTCTCAACATTCTTATTAACAATGCAGGGATTATGGCATGCCCTTTCTCACTTTCTGAAGACAACG TTGAGCTCCAATTCGCGACTAACCATTTGGGCCATTTTCTTCTGACTAACCTTTTGTTGGAAACCATGAAAAAAACGGCTCATTCCAGCAATAGAAAGGG AAGAATTGTCATTGTTGGGTCACTTGCTCATTACTTCACGTACAGGGAAGTTCTCCGATTTGACAGAATCAACGACGAATCTGGATACTTTGATATGCGT GCTTACGGACAGTCGAAGCTTGCAAACATACTGCACGCTAAGGAGCTAGCAAGACGCCTCAAGGAAGATGGTGCGAACATCACTGTTAATTCACTCCATC CTGGATCAATTGTGACCAACCTTTTGAGATATCACAGTTTCGTCAATTTGCTCGCCCACGTGTTTGTTAAATTTGCACTCAAGAATGTTCAACAGGGAGC TGCTACTAGCTGTTATCTGGCGCTGCACCCTCAAGTTAAAGATGTAACTGGTAAACACTTCATGGACAGTAACCTGGCCGAGCCGAATTCGCATGGGAAT GATATGGATTTGGCGAAGAAGGTTTGGGAGTTTAGCTTGAGCTTGACTTCCAGTCATGTAAAAGTAATTTCGAACCGGGTAGTGTTTCCGGAACACATTT AA
AA sequence Show only first row Show all	>Lus10032280 pacid=23168505 polypeptide=Lus10032280 locus=Lus10032280.g ID=Lus10032280.BGIv1.0 annot-version=v1.0 MKGSGRSSPSPLPSPVIGVGNKNIKPRFWPAQDDTKPPLQDPIRRSDPIDTEEPVLRLPPNFPPSKQLLKCLLGAMNYGDPIGNSMQKHYKTKVGREVKC SLGKMWVFGWKGESGFSARSTAEEVTSGIDGTGLTAIVTGATSGLGMEATRVLALRSVHVVMAVRDVDAGYEVRRSIIEGIPNAKLGVMKLDLSSLASVR EFASDFISRGLPLNILINNAGIMACPFSLSEDNVELQFATNHLGHFLLTNLLLETMKKTAHSSNRKGRIVIVGSLAHYFTYREVLRFDRINDESGYFDMR AYGQSKLANILHAKELARRLKEDGANITVNSLHPGSIVTNLLRYHSFVNLLAHVFVKFALKNVQQGAATSCYLALHPQVKDVTGKHFMDSNLAEPNSHGN DMDLAKKVWEFSLSLTSSHVKVISNRVVFPEHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032280 [exp]	0	1
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	8.9	0.9826
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10007383 [exp]	9.2	0.9548
AT1G68570			Major facilitator superfamily ...		Lus10038648 [exp]	12.6	0.9825
AT5G49600			Protein of unknown function, D...		Lus10017087 [exp]	14.4	0.8599
					Lus10006079 [exp]	15.4	0.9825
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	17.8	0.9825
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10028748 [exp]	18.9	0.8780
AT1G15780			unknown protein		Lus10023978 [exp]	19.9	0.9825
AT2G40070			unknown protein		Lus10008717 [exp]	21.8	0.9825
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10036824 [exp]	23.5	0.9825

Compare expression of checked genes

Lus10032280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.