Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11410 447 / 3e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 438 / 1e-155 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 436 / 4e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G02540 363 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 353 / 5e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 276 / 8e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 267 / 3e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 234 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 105 / 7e-26 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 101 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024649 [exp] 636 / 0 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 555 / 0 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 554 / 0 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024648 [exp] 539 / 0 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 512 / 0 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 507 / 0 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024685 [exp] 495 / 7e-178 AT4G23430 431 / 4e-152 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 449 / 4e-160 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 450 / 1e-159 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 477 / 3e-171 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 435 / 2e-154 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 420 / 1e-148 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 415 / 2e-146 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 410 / 4e-144 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 400 / 9e-141 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 376 / 3e-131 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 271 / 7e-90 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 271 / 7e-90 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 261 / 7e-86 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032281 pacid=23168622 polypeptide=Lus10032281 locus=Lus10032281.g ID=Lus10032281.BGIv1.0 annot-version=v1.0 ATGTGGATTTGTGGATGGAAAGGAGCTTCTGGGTTCTCAGGTTGCTCCACTGCCGAGCAAGTTACTAATGGAATCGATGCTACTGGTCTCACTGCAATCG TCACAGGAGGATCGAGTGGACTTGGTAAGGAGACATCAAGGGTGCTTGCCCTGAGAGGTGCTCGTGTGATTCTGGCTGTGAGAAATGTTGATGCTGGAAA GAGTGTTAAAGAAGAGATCCTCAAGGAAATTCCAAATGCTAAAGTTGACATCATGAAGCTGGATCTCAACTCAATGGCATCAGTCAAGAAATTCGCTTCC GAATACGTCTCCTCGGGCCTCCCTCTCAATCTTCTCATTAACAATGCAGGCGTTATGTGCCCTTACATGCTCTCCACAGATAACATAGAGATGCACTTTG CGACTAACCATGTTGGACATTTTCTCTTGACACATCTTTTGCTGGACACAATGAAGAAGACTGCTCGTGACAGTAATCTCGAAGGAAGAATCGTTAACTT GTCATCAGACTTCCACCGTTTCGCATATAAAGAAGGAATTCGTTTTGACAAGATCAACGATGAAACAGAGTATACACTCATGGGTGCTTATGGCCAATCA AAGCTCGCTAACATTCTTCATGCTAATGAGCTCGCAAGGCAATTCAAGGAAGAGGGAGTGAACATAACTGCAAATTCACTTCACCCTGGACTCATACCAA CAAACGTTCTTCGCCACAGAGGAGTTATGAATGCCATTACGAATATCATTGGCAGATTCATGATGAAAAATATTCCACAGGGAGCAGCAACTACATGCTA TGTGGCATTGCATCCACAAGTGAAGGGAGTAAGTGGAGAATACTTCAGTGACAGTAATGTATCGAAAAATGTAACCACTCTGGCTAAAGATGAAGAGCTG GGGAAAAAGCTGTGGAATTTCAGCATGGATTTGATCAATCCTTTTTGCTGA
AA sequence Show only first row Show all	>Lus10032281 pacid=23168622 polypeptide=Lus10032281 locus=Lus10032281.g ID=Lus10032281.BGIv1.0 annot-version=v1.0 MWICGWKGASGFSGCSTAEQVTNGIDATGLTAIVTGGSSGLGKETSRVLALRGARVILAVRNVDAGKSVKEEILKEIPNAKVDIMKLDLNSMASVKKFAS EYVSSGLPLNLLINNAGVMCPYMLSTDNIEMHFATNHVGHFLLTHLLLDTMKKTARDSNLEGRIVNLSSDFHRFAYKEGIRFDKINDETEYTLMGAYGQS KLANILHANELARQFKEEGVNITANSLHPGLIPTNVLRHRGVMNAITNIIGRFMMKNIPQGAATTCYVALHPQVKGVSGEYFSDSNVSKNVTTLAKDEEL GKKLWNFSMDLINPFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032281 [exp]	0	1
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	2.0	0.7426
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	9.5	0.7350
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10007648 [exp]	9.5	0.7817
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Lus10035381 [exp]	9.5	0.6557
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	17.1	0.7369
AT2G40435			unknown protein		Lus10010217 [exp]	19.1	0.7359
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	19.3	0.7190
AT4G13590			Uncharacterized protein family...		Lus10023685 [exp]	25.9	0.7402
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	26.8	0.7066
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10012682 [exp]	32.9	0.6778

Compare expression of checked genes

Lus10032281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.