Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23430 457 / 3e-163 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 455 / 2e-162 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 451 / 8e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G02540 367 / 1e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 363 / 3e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 268 / 2e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 264 / 8e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 225 / 8e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 108 / 4e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G54190 109 / 7e-27 PORA protochlorophyllide oxidoreductase A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024648 [exp] 574 / 0 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 572 / 0 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032281 [exp] 554 / 0 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 553 / 0 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 524 / 0 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 523 / 0 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024685 [exp] 511 / 0 AT4G23430 431 / 4e-152 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 454 / 3e-162 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 455 / 6e-162 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 495 / 2e-178 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 453 / 9e-162 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 449 / 4e-160 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 447 / 1e-158 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 427 / 2e-151 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143800 [exp] 418 / 1e-147 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 379 / 3e-132 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 268 / 2e-88 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 268 / 2e-88 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 262 / 3e-86 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032282 pacid=23168637 polypeptide=Lus10032282 locus=Lus10032282.g ID=Lus10032282.BGIv1.0 annot-version=v1.0 ATGTGGATATTTGGATGGAAAGGAGCATCTGGGTTCTCGAGTTGCTCCACTGCCGAGCAAGTTACTAATGGAATCGATGCTACTGGTCTCACTGCAATTG TCACAGGGGCATCGAGTGGAATTGGTAAGGAGACATCAAGGGTGCTTGCCCTGAGAGGTGCTCATGTGATTCTAGCTGTGAGAAATGTTGATGCTGGTAA GAGTGTTAAAGAAGAGATCCTCAAGGAAATCCCAAATGCTAAAGTTGACATCATGAACCTGGATCTCAGCTCAATGGCATCAGTCAAGAAATTCGCCTCC GAATACGTCTCCTCAGGCCTTCCACTCAATCTTCTCATTAACAATGCAGGGATTATGTGTCCTTTCATGCTCTCCACAGACAACATAGAGATGCAATTTG CTACTAACCATGTTGGACATTTTCTCTTGACACATCTTCTGCTGGACACGATGAAGACGACTGCTCGTGACAGTAATGTCGAAGGAAGAATCGTTTACTT GTCATCAGAACTCCACCGTTATCCATACAAAGAAGGAATTCGTTTCGACAAGATCAACGAAAAAGCAGGGTATAACACCTTCGGCGCTTATGGACAGTCG AAACTCGCTAACCTTCTCCATGCTAATGAGCTCGCGAGGCGCTTCAAGGAAGAGGGAGTCAACATAACTGCCAATTCCCTTCACCCTGGAGTCATAGCAA CAAACCTTCTTCGCCACAGTCTTCTTGATGCCATTCTGAATACCTTTGGCAGATACGTGATGAAAAATGTTCAGCAGGGAGCAGCAACTACATGTTATGT AGCATTGCATCCACAAGTGAATGGAGTAAGTGGAGAATACTTCAGTGACAGTAACGTATCCAAAGCAGCCCCTCTGGCCAAAGATGAAGAGTTGGGCAGA AAGCTGTGGGATTTCAGCATGGACTTGATCAACCCTTTTTGCTGA
AA sequence Show only first row Show all	>Lus10032282 pacid=23168637 polypeptide=Lus10032282 locus=Lus10032282.g ID=Lus10032282.BGIv1.0 annot-version=v1.0 MWIFGWKGASGFSSCSTAEQVTNGIDATGLTAIVTGASSGIGKETSRVLALRGAHVILAVRNVDAGKSVKEEILKEIPNAKVDIMNLDLSSMASVKKFAS EYVSSGLPLNLLINNAGIMCPFMLSTDNIEMQFATNHVGHFLLTHLLLDTMKTTARDSNVEGRIVYLSSELHRYPYKEGIRFDKINEKAGYNTFGAYGQS KLANLLHANELARRFKEEGVNITANSLHPGVIATNLLRHSLLDAILNTFGRYVMKNVQQGAATTCYVALHPQVNGVSGEYFSDSNVSKAAPLAKDEELGR KLWDFSMDLINPFC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	0	1
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	1.4	0.9568
AT3G05390			unknown protein		Lus10004494 [exp]	2.8	0.9499
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	3.0	0.9523
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	3.0	0.9414
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10014332 [exp]	3.2	0.9389
					Lus10005096 [exp]	3.5	0.9487
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	3.5	0.9563
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	3.9	0.9491
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	4.0	0.9357
AT5G57770			Plant protein of unknown funct...		Lus10015501 [exp]	4.4	0.9343

Compare expression of checked genes

Lus10032282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.