Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63910 259 / 7e-82 MYB AtMYB103 myb domain protein 103 (.1) AT3G13890 211 / 1e-63 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT4G01680 201 / 3e-61 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT5G26660 203 / 1e-60 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G25740 196 / 2e-60 RNA binding Plectin/S10 domain-containing protein (.1.2) AT5G41520 196 / 5e-60 RNA binding Plectin/S10 domain-containing protein (.1.2) AT1G09540 201 / 1e-59 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT5G52650 192 / 7e-59 RNA binding Plectin/S10 domain-containing protein (.1) AT1G57560 196 / 1e-58 MYB ATMYB50 myb domain protein 50 (.1) AT3G12720 194 / 1e-57 MYB ATMYB67, AtY53 myb domain protein 67 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024669 [exp] 824 / 0 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10038846 [exp] 234 / 9e-72 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10039282 [exp] 214 / 3e-67 AT4G25740 236 / 1e-80 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10015608 [exp] 210 / 6e-63 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038022 [exp] 199 / 9e-58 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10014966 [exp] 182 / 2e-53 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10038395 [exp] 179 / 3e-52 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10039610 [exp] 180 / 2e-51 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10001226 [exp] 177 / 2e-51 AT3G12720 231 / 8e-75 myb domain protein 67 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132000 [exp] 259 / 9e-83 AT1G63910 317 / 2e-107 myb domain protein 103 (.1) Potri.001G099800 [exp] 259 / 1e-82 AT1G63910 319 / 3e-108 myb domain protein 103 (.1) Potri.017G146700 [exp] 205 / 1e-63 AT4G25740 180 / 1e-58 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.001G197000 [exp] 210 / 4e-63 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.005G040100 [exp] 203 / 7e-63 AT4G25740 177 / 2e-57 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.013G001000 [exp] 203 / 2e-59 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.015G082700 [exp] 201 / 2e-59 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.014G111200 [exp] 202 / 5e-59 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.005G001600 [exp] 201 / 7e-59 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.012G084100 [exp] 197 / 2e-58 AT5G26660 253 / 1e-81 myb domain protein 86 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03501 [flax] [poplar] S10_plectin Plectin/S10 domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032298 pacid=23168655 polypeptide=Lus10032298 locus=Lus10032298.g ID=Lus10032298.BGIv1.0 annot-version=v1.0 ATGGGGCACCATTCATGCTGCAACCAGCAGAAGGTGAAGAGGGGGCTCTGGTCTCCGGAAGAAGACGAAAAGCTCATTCGTTACATCACTACCCACGGCT ACGGCTGCTGGAGTGAAGTCCCCGAGAAAGCTGGGCTGCAGAGATGCGGCAAGAGCTGCCGGTTGCGGTGGATTAATTACTTGAGGCCTGATATTCGAAG AGGCAGGTTTACACCCGACGAAGAGAAGTTGATCATCAGCCTCCATGGAGTTGTTGGCAACAGATGGGCACACATTGCCAGCCACTTACCTGGAAGAACG GACAACGAGATAAAAAACTATTGGAATTCGTGGATCAAGAAGAAGATACGAAAGCCCCCGCCGCCTTATCCATCACCACCGTCGCTATCCTCCTCATCAC CTTTACTCCTCCAAAGTACTCCTCCACCGCCACCTTGCACCGGCGTTAGCGGTGCAACTCATCATCAGTTGGTTACCATAACCAGTTACCCGACCTCCAC CCATGTACTAGACCCGAGCCATCAACCCGAACCGGGACCACGAGGGACCCACCTCTTCCCCTCCGCCGTTCAAGACGCCGTCTTTCATCCTCCCCCTCCT TTACCATCCATTTTCATCTTCGACGGAGATCATCATCATCATCATCACCAGAACCAGCTTTTCATCGAACCGATTTCCGGAAGTTGGAATGATCACAACT TTCACCATCATAATCATAATCACAATCATCCTCCTCCTCCGCAGTCCCATCAGCCCTTCGGATTCCTGCCGCCGTTGTTCGAGCACGACGGAGACCACAT GGTGGGGTCCATGGAGGATGTAGATCAGGAGGGGACAGCCGGGGCAAGGACGGTGATGATGAACGACGAGGAGTGGGCGGCGGCTGTGGATTCACGTCAT GAGCCGTCGTCGGGGAATAATAGCTTCTTATTTTGGGAGGAAAACGACGTCGTTGTGGACGAGGGTGGGATTATTAGGTGCGGCGGGGATAGTAATTTTA CGGCAGCAATCATCTCCGAGAAGAACCGCCGCGAGATCTCCAAGTACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGATTTCAATCTGGCGAAGCA TCCGGACATCGATGTCCCCAATCTTCAGGTGATTAAGCTTATGCAAAGCTTCAAGTCGAAGGAGTACGTCGGGGAGACGTTCGCCTGGATGCATTATTAC TGGTACCTCACCAACGAAGGGATTGAGTTCCTCCGTGCGTACCTGAATCTGCCTTCGGAGATCGTCCCTGCCACGTTGAAGAAGCAGGCTAAGGCCGGCG GAAGGCCACAATTCGGTGGTGATCGCCCACGTGGCCCTCCTAGGTCTGATGGAGAGAGGAGGTTCGGTGGCGATAGAGAGGGTTACCGTAGCGGACCTAG AGCCCCTGGTGGCGAGTACGGTGACAAGGGCGGTGCTCCTGCTGACTACAGACCAACTTATGGGGGTCCGAGAGCTGGCTTTGGCCGCGGAGGAGGTAGC TATAGTGGTGGTGCTGCTGCTACGAGCTCCGATCTTGCTTGA
AA sequence Show only first row Show all	>Lus10032298 pacid=23168655 polypeptide=Lus10032298 locus=Lus10032298.g ID=Lus10032298.BGIv1.0 annot-version=v1.0 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHGVVGNRWAHIASHLPGRT DNEIKNYWNSWIKKKIRKPPPPYPSPPSLSSSSPLLLQSTPPPPPCTGVSGATHHQLVTITSYPTSTHVLDPSHQPEPGPRGTHLFPSAVQDAVFHPPPP LPSIFIFDGDHHHHHHQNQLFIEPISGSWNDHNFHHHNHNHNHPPPPQSHQPFGFLPPLFEHDGDHMVGSMEDVDQEGTAGARTVMMNDEEWAAAVDSRH EPSSGNNSFLFWEENDVVVDEGGIIRCGGDSNFTAAIISEKNRREISKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSKEYVGETFAWMHYY WYLTNEGIEFLRAYLNLPSEIVPATLKKQAKAGGRPQFGGDRPRGPPRSDGERRFGGDREGYRSGPRAPGGEYGDKGGAPADYRPTYGGPRAGFGRGGGS YSGGAAATSSDLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	0	1
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	1.7	0.9522
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10024669 [exp]	2.0	0.9335
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10000787 [exp]	2.4	0.9341
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	4.5	0.9347
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	5.3	0.9124
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	5.5	0.9288
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10014495 [exp]	6.6	0.9140
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10030281 [exp]	7.2	0.9125
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	7.4	0.9295
AT4G37820			unknown protein		Lus10019253 [exp]	7.9	0.8781

Compare expression of checked genes

Lus10032298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.