Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23750 125 / 4e-33 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G27950 123 / 2e-32 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT5G53290 113 / 1e-28 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT4G11140 102 / 3e-25 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT3G61630 92 / 4e-21 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT1G22985 82 / 1e-18 AP2_ERF CRF7 cytokinin response factor 7, Integrase-type DNA-binding superfamily protein (.1) AT2G33710 82 / 3e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 82 / 4e-18 AP2_ERF RAP2.6L related to AP2 6l (.1) AT2G46310 83 / 5e-18 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT5G61890 82 / 5e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033938 [exp] 408 / 3e-143 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10017550 [exp] 199 / 4e-62 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10039324 [exp] 140 / 3e-38 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10027573 [exp] 140 / 3e-38 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10018756 [exp] 92 / 2e-20 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10014054 [exp] 86 / 3e-19 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10016827 [exp] 83 / 5e-18 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10003601 [exp] 83 / 5e-18 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 82 / 8e-18 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G136300 [exp] 158 / 1e-45 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.001G094800 [exp] 147 / 2e-41 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.012G032900 [exp] 138 / 1e-37 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.015G023200 [exp] 135 / 1e-36 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.002G167400 [exp] 117 / 2e-30 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.019G131300 [exp] 112 / 2e-28 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.014G094500 [exp] 112 / 2e-28 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.013G158500 [exp] 103 / 3e-25 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.009G101900 [exp] 85 / 6e-19 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.010G006800 [exp] 84 / 1e-18 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10032353 pacid=23168614 polypeptide=Lus10032353 locus=Lus10032353.g ID=Lus10032353.BGIv1.0 annot-version=v1.0 ATGGATACAGTCCAGTTCACCAAGCTCCTCCGCCGCTCTTCATTTTCCGATGACTCGAAACCGCCGACGACTCAGGTAGTCAGGATATCCGTGACCGACC CAGATGCTACTGATTCTTCAAGCGACGAAGAAGGGAATGGGTTTTTACGGCGGCGGGTGAAGAGATTCGTTAGTGAGATTACGGTGGAGTCTTCTTCTTC TTCTTCCTTACATTCTTGCTCTGTTTCTGGTGGAAGTGACGAACACGGAGCTGCTTTGGGGGCTAATAATAACCGGAGGATGAGGCGTAGGAAATCAGGA AGCTCGAAGGCTAATAATAAATCGTCGAAAGATTTGTCGGTGAGGACTTCAGCTCCGGCTGTGAGGAAATTCAGAGGCGTACGGCAGCGGCCGTGGGGGA AGTGGGCGGCGGAGATTAGAGACCCACTCAGGCGCGTGAGGGTGTGGCTGGGTACGTACAATACGGCGGAGGAAGCCGCGGCGGTTTACGACAACGCGGC TCTCCAGCTGCGTGGACCAGACGCGCTGACCAATTTCTCCGCTCCGGTGGTGGCGGCGACTGCCCCCAACGCTACTACCGCTAGCTCCGACTACAACTCC GGGGAGGAATCACGAAATGAAAAGGTTGGTCTACGGTCTCCAGTCTCGACCCTCCGGTTTCCGTCTCCAACGGAAGAGGCGGAGTCGGCAGCGTTGCCGG CGGCGGCGAAGGTGAAAGAGGAGTACGACTGTTCGGAGATTTCGGAGTTCTCTTCTTCCTTGTTCTCCGACTCGGCGGCGTATGATTTCAAGAGCTCTAT GCGGGATATCTTCGACGAGACCAACTTGGCCTTCGACGAAGGATTTCTGAACGCGGATTCCAGCGACGTCGTGTTCATGGACGCCGCCGTGGAGGCGGCA GATTTCGGGTTCGGACTATCCAGTTTCCGTACAGAGGACTGTTTCCAGGACATCGGCGACTTGTTCTGGTCGGATTCACTGCTCTCCGTATGA
AA sequence Show only first row Show all	>Lus10032353 pacid=23168614 polypeptide=Lus10032353 locus=Lus10032353.g ID=Lus10032353.BGIv1.0 annot-version=v1.0 MDTVQFTKLLRRSSFSDDSKPPTTQVVRISVTDPDATDSSSDEEGNGFLRRRVKRFVSEITVESSSSSSLHSCSVSGGSDEHGAALGANNNRRMRRRKSG SSKANNKSSKDLSVRTSAPAVRKFRGVRQRPWGKWAAEIRDPLRRVRVWLGTYNTAEEAAAVYDNAALQLRGPDALTNFSAPVVAATAPNATTASSDYNS GEESRNEKVGLRSPVSTLRFPSPTEEAESAALPAAAKVKEEYDCSEISEFSSSLFSDSAAYDFKSSMRDIFDETNLAFDEGFLNADSSDVVFMDAAVEAA DFGFGLSSFRTEDCFQDIGDLFWSDSLLSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	0	1
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10033938 [exp]	1.0	0.9585
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10000652 [exp]	6.9	0.7952
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10006178 [exp]	7.9	0.7621
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	11.7	0.8166
AT5G41270			unknown protein		Lus10030018 [exp]	11.8	0.8171
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	13.6	0.8498
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	15.1	0.8489
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	19.9	0.8404
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10041455 [exp]	22.7	0.7548
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	25.2	0.8140

Compare expression of checked genes

Lus10032353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.