Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23940 1133 / 0 FtsH extracellular protease family (.1) AT2G30950 278 / 2e-81 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 273 / 1e-79 FTSH8 FTSH protease 8 (.1) AT5G15250 271 / 4e-79 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G26140 256 / 2e-73 FTSH4 FTSH protease 4 (.1) AT1G50250 256 / 3e-73 FTSH1 FTSH protease 1 (.1) AT5G42270 250 / 3e-71 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G53170 245 / 1e-68 FTSH11 FTSH protease 11 (.1) AT5G58870 240 / 5e-67 FTSH9 FTSH protease 9 (.1) AT3G47060 238 / 3e-66 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023066 [exp] 1602 / 0 AT4G23940 1246 / 0.0 FtsH extracellular protease family (.1) Lus10000334 [exp] 283 / 7e-82 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10001054 [exp] 274 / 5e-80 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 274 / 5e-79 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10012277 [exp] 254 / 7e-75 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 253 / 3e-72 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 251 / 1e-71 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001060 [exp] 241 / 4e-67 AT5G53170 1090 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 240 / 7e-67 AT5G53170 1087 / 0.0 FTSH protease 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089800 [exp] 1222 / 0 AT4G23940 1241 / 0.0 FtsH extracellular protease family (.1) Potri.002G215100 [exp] 275 / 2e-80 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 271 / 5e-79 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 269 / 5e-78 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 257 / 8e-74 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 253 / 2e-72 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 248 / 1e-69 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 239 / 2e-67 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.012G000700 [exp] 238 / 3e-66 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.001G249100 [exp] 237 / 4e-66 AT5G58870 997 / 0.0 FTSH protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10032404 pacid=23168626 polypeptide=Lus10032404 locus=Lus10032404.g ID=Lus10032404.BGIv1.0 annot-version=v1.0 ATGACCAGCATTGACACTCTCTTCACTTCTAGGGCTTATCTCCCTAAACCCTACAAGTGTTCATTCAAATGCAATCGGAACTTCCACCAGAGGGCGCGTC CTTTGCTGCACAGATCATTCACAGTTCTGTGCAAGGTGAATTCCAGCTCCTCCTCCAATTCGCAGCCCGGTGGGACTACCGGAAAGGATGATTTCATGAC GAGGGTCCTGAAGGAAAATCCAAGCCAAATCAAACCTAGGTACCTAATTGGCGGGAAGATCTATACCTCGAGAGAAAGAGAGGATTTGAGCAAGAGAAAG GACGAGAAGAACTCTGGGGTTTTAGAGTTACTAGCAAAGGTGTTGAGTTTCAAGGCAGAGAAGCCGACGACTGAAAGGACGAATGAGGATCAAAATGGGG AGAAAGGCGTGTATTTGAATGACATTCTGCGGGAATATAAGGGCAAGCTTTATGTGCCTGAGCAAGTGTTTGGGGCTGAGCTGACTGAGGAAGAGGAGTT CAGTAGGGATGTAGAGGAGTTGCCAAAAATGAGCCTTGACGAGTTCAGGAAAGCTATGCAAACTGACAAGGGAAGGAATAGTTTTAGTCTTGGAAACGTT TATAAGGATTTTGTTGTAGACTTGAAAGAGATACCTGGGGTCAAAAGATTGCACAGAACGAAATGGGCAATGAGGCTAACTGAGGATGAAACTCTAGACC TTTTGGGAGAGTATAAAGGTCCCATGTATGAAGTTGACAGACAATTGAAGGTAGGAGTTTCCTTCAGCTCACCAAAGTCATCTGTTGAAACGATGACGGA TTTTTTTCATCCTGTGGCCTCTTCTATATCTGGCAGAATGATGGTAGAGCTTGGGATGATAACAGCTGCTATTGCTGCAGCAGCAGCTGTTGTAGGGGGG TTCCTAGCTTCTGCTGTATTTGCTGTTACCAGTTTCATCTTTGTAACCACCGTACATGTTGTTTGGCCGGTTATCAGACCTTTTGTTAATCTGTTTCTTG GCATTGTCCTTGGTATCTTTGAGAGGCTCTGGGAGAATGTTGTTGAAGTTTTCTTTGATGGAACGATCTCCGCTAAAATGTATGAACTTTATACGTATGG TGGTTTATCTGCCAGCATTCAAATGCTAAAACCAATAGTGCTTGTGGTCTTGACCATGGTTCTTATGGTTCAGTTTACCGTCTCAAGACGACCTAAGAAC TTCAGAAAATGGGATTTATGGCAAGGAATTGACTTTTCACGTTCTAAAGCTGAAGCTCGGGTTGATGGTTCAACAGGAGTTAAATTTTCTGATGTTGCAG GGATTGATGAAGCAGTGGAGGAACTTCAAGAGTTGGTGAGGTACTTGAAGAATCCAAAATTGTTTGATCAAATGTGCATCAAGCCTCCTCATGGTGTGCT TCTGGAAGGGCCTCCAGGGTGCGGGAAGACTCTTGTTGCCAAGGCTATAGCTGGTGAAGCTGGTGTTCCATTTTACCAAATGGCTGGGTCAGAATTTGTT GAAGTTTTAGTTGGTGTTGGTTCTGCCCGTATCAGAGATCTTTTTAAGAGAGCCAAGGTTAATAAACCCTCGGTTATTTTCATTGATGAAATCGATGCAT TGGCAACTAGGCGTCAGGGGATGACTAAGGACTCTAAAGACATGGTCTATAATGTTGCCACTCAAGAGAGGGAAACTACATTAAATCAGATTTTGATAGA ACTTGATGGGTTTGACACTGGCAAAGGGGTTATATTCTTGGGTGCTACAAATCGGAGGGACTTACTAGATCCAGCACTTCTTCGGCCTGGTCGATTTGAT CGAAAGATAAAAATCCGTCCTCCAAATGCTATAGGGAGATTTGAAATTTTGAAAATCCATGGGAGCAAAGTGAAAATGTCAGAAACTGTTGATTTGTCTA GTTATGCCAATAACTTACCTGGGTGGAGTGGCGCAAAGCTGGCTCAGCTGGTCCAAGAAGCTGCCCTAGTAGCTGTCAGGCAAGGGCATACATCCATAAT TGAATCAAACATGAATGAAGCAGTTGATCGTCTTACTGTTGGCCCAAAGCTTAAAGGAATGGATTTGACTCATCAAGGCCAATGCCGTATGGCTACTTCT GAAGTTGGTGTTGCAATAACTTCTCATCTGCTCAGGCGATATGAGAACGCACAAGTTGAATTCTGCGATCGGATTTCAATAGTCCCCCGTGGTCAGACAT TATCACAACTAGTATTCCATCGGCTTGATTATGACGACGCATACATGTTTGAAAGACGACCACAATTGCTGCACCGGCTTCAGGTGCTTCTTGGTGGTAG AGCTGCTGAAGAGGTAATTTATGGTCGAGATTCATCGAAGGTAACAGTTTCTTACCTTGCCGATGCAACCTGGCTAGCTCGCAAGATCATTTCCGTATGG AATTTGGAAGATCCAATGGTTATCCATGGAGAACCACCTGCATGGAGAAAGAAGCCTAGATTTGTCGGTCCAAAACTAGACTTTGAAGGGTCACTTTACG ATTCCCATGGCATGACTGAACGTCCTATAAACTTCGATCTGGATGATGAGGTTGCAAAGAGGACCGAGCAGTTGTTGCAGGATATGTATGGCAGAACAAT CTCATTGCTGAGACGGCACCATGCTGCTTTGCTAAAAACCATCAAGGTTCTTCTTAACCACGAGGAGATCAACGGCGAGGCAATCGAGTACATCTTGACG AATTACCCTCAACACACTCGACTAACCCTTCTACTGGAAGAGGACAACCCTGGAAGCATACCGCTCATGGACGAGAAACTAGAACGTGATTATGCTCTGG CAGCTCCATCAGGAAACTAA
AA sequence Show only first row Show all	>Lus10032404 pacid=23168626 polypeptide=Lus10032404 locus=Lus10032404.g ID=Lus10032404.BGIv1.0 annot-version=v1.0 MTSIDTLFTSRAYLPKPYKCSFKCNRNFHQRARPLLHRSFTVLCKVNSSSSSNSQPGGTTGKDDFMTRVLKENPSQIKPRYLIGGKIYTSREREDLSKRK DEKNSGVLELLAKVLSFKAEKPTTERTNEDQNGEKGVYLNDILREYKGKLYVPEQVFGAELTEEEEFSRDVEELPKMSLDEFRKAMQTDKGRNSFSLGNV YKDFVVDLKEIPGVKRLHRTKWAMRLTEDETLDLLGEYKGPMYEVDRQLKVGVSFSSPKSSVETMTDFFHPVASSISGRMMVELGMITAAIAAAAAVVGG FLASAVFAVTSFIFVTTVHVVWPVIRPFVNLFLGIVLGIFERLWENVVEVFFDGTISAKMYELYTYGGLSASIQMLKPIVLVVLTMVLMVQFTVSRRPKN FRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPKLFDQMCIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGMTKDSKDMVYNVATQERETTLNQILIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFD RKIKIRPPNAIGRFEILKIHGSKVKMSETVDLSSYANNLPGWSGAKLAQLVQEAALVAVRQGHTSIIESNMNEAVDRLTVGPKLKGMDLTHQGQCRMATS EVGVAITSHLLRRYENAQVEFCDRISIVPRGQTLSQLVFHRLDYDDAYMFERRPQLLHRLQVLLGGRAAEEVIYGRDSSKVTVSYLADATWLARKIISVW NLEDPMVIHGEPPAWRKKPRFVGPKLDFEGSLYDSHGMTERPINFDLDDEVAKRTEQLLQDMYGRTISLLRRHHAALLKTIKVLLNHEEINGEAIEYILT NYPQHTRLTLLLEEDNPGSIPLMDEKLERDYALAAPSGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23940			FtsH extracellular protease fa...		Lus10032404 [exp]	0	1
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	1.7	0.9386
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	3.5	0.9151
					Lus10036489 [exp]	5.7	0.9162
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	7.1	0.9109
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	12.4	0.8857
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	14.0	0.9130
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	14.1	0.8977
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	14.5	0.9044
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10014211 [exp]	15.2	0.8595
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	16.1	0.9063

Compare expression of checked genes

Lus10032404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.