Plant FIBer expression Database

Lus10032443 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71040 808 / 0 LPR2 Low Phosphate Root2, Cupredoxin superfamily protein (.1)
AT1G23010 796 / 0 LPR1 Low Phosphate Root1, Cupredoxin superfamily protein (.1)
AT3G09220 45 / 0.0001 LAC7 laccase 7 (.1)
AT2G38080 44 / 0.0003 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035546
[exp]
43 / 0.0007 AT3G09220 710 / 0.0 laccase 7 (.1)
Lus10034439
[exp]
42 / 0.001 AT5G60020 943 / 0.0 laccase 17 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G114200
[exp]
849 / 0 AT1G71040 790 / 0.0 Low Phosphate Root2, Cupredoxin superfamily protein (.1)
Potri.009G102700
[exp]
44 / 0.0002 AT5G03260 881 / 0.0 laccase 11 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0026 CU_oxidase PF07731 Cu-oxidase_2 Multicopper oxidase
CL0026 CU_oxidase PF07732 Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence
>Lus10032443 pacid=23146288 polypeptide=Lus10032443 locus=Lus10032443.g ID=Lus10032443.BGIv1.0 annot-version=v1.0
ATGAAGAGCTTCTTCTTCATGCTTTTTGTGTGGTTGCTGTACGTTTTGGTTTCTCCAGAAACATGCAGGGCGGCTTTCGACGAGGAGAAGCTTCTCAATG
TCTCAAAATTGAAGATGTTTGTGGATGAGCTACCGGAGATGCCAACTGTTCCTGGATATAATACCCTCCCCAACCGCTCCTACGAACCGGCCACCCTCGC
CATTGGCATGTTCAGCAAATACTGGAAATTCCACAGGGACCTCCCACCAACGCCAGTCTTCGCCTACGGTACATCCAAGCACACTGCAACCGTACCCGGT
CCTACAATCGAGGCCATCCACGGCGTCTCCACTCACGTGACATGGACAAATCACCTCCCTTCATCCCACATCCTTCCTTGGGACCCAACAATCCCCACCG
CCCCTCTTACCCACGGTATTCCTACGGTGGTGCACCTCCACGGTATGGTGGGTGAACCCGAGAGCGACGGACACGCTTACTCCTGGTTCACCAATGGATT
CCGAGAAAAGGGCCCCACTTGGACTACCAAGACTTACCACTACCCGAACGTTCAACAACCTGGAAGCCTCTGGTATCACGATCACGCCATGGGGTTGACC
CGGATCAACCTCTTAGCCGGTCTGATCGGATCCTACGTCATCCGAGATCCGAAAACTGAATCCCCACTTCGGTTACCGACGGGAAAAGAGTTCCATCGAC
GGCTGGTGATTTTCGACCGGAGCTTCCGTGCTAACGGTTCTATATACATGAACTCCACAGGAAACAACCCCGATATTCACCCGCAGTGGCAGCCGGAGTA
TTTTGGCGATGCGATTATCGTCAATGGGAAAGCGTGGCCTCGTTTGTTGGTACGACGTCGTAAGTATCGGTTTACAGTCATCAACGCCAGCAATGCTAGG
TTCTTCAGGCTGTTTTTCAAGAACGGGTTACGATTGGTCCACGTAGCTGCTGACTCGGCTTACTTGGGTAAGCCTGTAGTGTCAGCCGATGCCCTATTGG
CACCTTCCGAAATTGCTGACTTCGTCGTTGACTTTTCCAAATCGGATTCCCACTCTGTTATCCTAGCGAACGACGCGCCGTATCCTTACCCGAGTGGGGA
TCCCGTCAACGAAGAAAACAGTGTGGTGATGAAGTTTGTAATTCGAAGACGAAAGGAGCTGGACACATGGCGAGTTCCGAGCCGTTTGATCAAATATCCC
GTCCCAAGATTATCCAGTGCGACTAAGACGCGGTACATTGCGATGTACGAGTACGCCAGCGCCATAGATGAGCCGACTCATTTGTACATCAACGGGAAAT
CGTTCGAGGCTCCGGCGACAGAAAGGCCGAAAGTCGGGACGAGCGAGGTATGGTACGTGATTAATCTGACGGAGGACAACCATCCTTTGCACGTGCACTT
GGGACTGTTTTCAGTGATGGAGCAGACAGAGCTGGTAAATGTTGAGGAGTTCAAATCCTGCATGAATAAACTGAACGACGCGATCAGGTGCCACGTGGAG
AAGTATGCACGTGGGAAGAGATTAGAGGTGGTTCGTCAGGAAAAGGGATGGAAGAACGTGTATAAGATGATGCCTGGGGTTGTGACCAAAATTCTGGTGA
GATTTGCTTACATACACTCCACCGCGCCGTACGTGTTCAATGCCACTGCGGAGCCTGGCTACGTGTACCACTGCCACATACTGGACCACGAAGACAACGT
TATGATGCGGCCTCTGAAGTTAGTGGATTGA
AA sequence
>Lus10032443 pacid=23146288 polypeptide=Lus10032443 locus=Lus10032443.g ID=Lus10032443.BGIv1.0 annot-version=v1.0
MKSFFFMLFVWLLYVLVSPETCRAAFDEEKLLNVSKLKMFVDELPEMPTVPGYNTLPNRSYEPATLAIGMFSKYWKFHRDLPPTPVFAYGTSKHTATVPG
PTIEAIHGVSTHVTWTNHLPSSHILPWDPTIPTAPLTHGIPTVVHLHGMVGEPESDGHAYSWFTNGFREKGPTWTTKTYHYPNVQQPGSLWYHDHAMGLT
RINLLAGLIGSYVIRDPKTESPLRLPTGKEFHRRLVIFDRSFRANGSIYMNSTGNNPDIHPQWQPEYFGDAIIVNGKAWPRLLVRRRKYRFTVINASNAR
FFRLFFKNGLRLVHVAADSAYLGKPVVSADALLAPSEIADFVVDFSKSDSHSVILANDAPYPYPSGDPVNEENSVVMKFVIRRRKELDTWRVPSRLIKYP
VPRLSSATKTRYIAMYEYASAIDEPTHLYINGKSFEAPATERPKVGTSEVWYVINLTEDNHPLHVHLGLFSVMEQTELVNVEEFKSCMNKLNDAIRCHVE
KYARGKRLEVVRQEKGWKNVYKMMPGVVTKILVRFAYIHSTAPYVFNATAEPGYVYHCHILDHEDNVMMRPLKLVD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71040 LPR2 Low Phosphate Root2, Cupredoxi... Lus10032443
[exp]
0 1
Lus10022598
[exp]
1.0 0.9308
AT5G10770 Eukaryotic aspartyl protease f... Lus10026244
[exp]
1.7 0.9073
AT3G25250 AtOXI1, OXI1, A... oxidative signal-inducible1, A... Lus10009592
[exp]
3.7 0.9000
AT1G52190 Major facilitator superfamily ... Lus10038616
[exp]
3.7 0.9199
AT3G09970 Calcineurin-like metallo-phosp... Lus10014383
[exp]
5.1 0.8936
AT1G07090 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, ... Lus10023383
[exp]
6.0 0.9030
AT5G49690 UDP-Glycosyltransferase superf... Lus10008955
[exp]
6.7 0.8913
AT2G47600 ATMHX1, ATMHX MAGNESIUM/PROTON EXCHANGER 1, ... Lus10007879
[exp]
6.7 0.9051
AT5G05200 Protein kinase superfamily pro... Lus10030509
[exp]
7.4 0.8964
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Lus10019364
[exp]
9.8 0.8766

Lus10032443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.