Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07580 141 / 2e-41 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61590 120 / 8e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 118 / 5e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47230 118 / 4e-32 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G61600 115 / 2e-31 AP2_ERF ERF104 ethylene response factor 104 (.1) AT4G17490 114 / 8e-31 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G47220 105 / 6e-28 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 100 / 1e-25 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT2G44840 99 / 3e-25 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G43410 96 / 4e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042995 [exp] 355 / 3e-126 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 123 / 2e-34 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 119 / 5e-33 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10007841 [exp] 105 / 2e-27 AT5G47230 121 / 4e-33 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10016212 [exp] 103 / 5e-27 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10004752 [exp] 102 / 1e-26 AT5G07580 122 / 4e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10016224 [exp] 102 / 1e-26 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10029331 [exp] 101 / 2e-26 AT2G44840 147 / 4e-44 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 100 / 2e-26 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G079600 [exp] 154 / 7e-47 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 151 / 1e-45 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.003G150800 [exp] 132 / 2e-37 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 125 / 3e-35 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G080600 [exp] 120 / 1e-32 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.001G154200 [exp] 119 / 4e-32 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.004G051700 [exp] 98 / 1e-25 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.001G154100 [exp] 100 / 2e-25 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 100 / 2e-25 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.011G061800 [exp] 100 / 3e-25 AT4G18450 134 / 2e-37 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10032498 pacid=23146330 polypeptide=Lus10032498 locus=Lus10032498.g ID=Lus10032498.BGIv1.0 annot-version=v1.0 ATGTCAACTCTCGAGGAATCCACCGCTCTCCAGCTCATCAAACAGCATTTGCTAGATGACGGATCTTCATCATTATCATATTCTTCTCCCGCCGCCGCTT TCATCTCTAATTTCAGCTCGCTTCCCGTCAAAATCAAAGAAGAAGAAGACCAATCGACGTCCCCTGTTCGGAGCCCCGAATCGGAATTGGACTGTTTCTT CTTCCAACAACAGAGCCCCGAATTTCTTCGCGACCAGACGACGTCTCCCAAGTCCGCCGCTTCCTGTTCGCCGCCTTTGCTAGTACAGTCCGACGAGAAG GTCCAGGAAGAGAGCGGGAGGAAGTTCAGAGGCGTGAGGAAGAGGCCGTGGGGCAAATACGCGGCGGAGATCCGAGACCCGACCCGGAAGGGCAGCCGGG TATGGCTGGGCACTTTTGGCAGTGACGTGGACGCGGCGAGAGCCTATGACTTCGCGGCTTTTGAGATGAGGGGGAGGAAAGCGATACTTAATTTCCCGTT GGAGGCCGGTAAGTACGACCTCCCAGCTTGCACCGCCTCCCGGAAACGGAGGAAATTGAAGAACGAGGCTGCGGCCGCGGCGCCGGTGAACTGGGAAGAT GAGGACCAAAAGAGTTTGGTGTGGGCTCTGGAATAA
AA sequence Show only first row Show all	>Lus10032498 pacid=23146330 polypeptide=Lus10032498 locus=Lus10032498.g ID=Lus10032498.BGIv1.0 annot-version=v1.0 MSTLEESTALQLIKQHLLDDGSSSLSYSSPAAAFISNFSSLPVKIKEEEDQSTSPVRSPESELDCFFFQQQSPEFLRDQTTSPKSAASCSPPLLVQSDEK VQEESGRKFRGVRKRPWGKYAAEIRDPTRKGSRVWLGTFGSDVDAARAYDFAAFEMRGRKAILNFPLEAGKYDLPACTASRKRRKLKNEAAAAAPVNWED EDQKSLVWALE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	0	1
AT5G17860		CAX7	calcium exchanger 7 (.1)		Lus10001330 [exp]	2.6	0.8333
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014084 [exp]	4.0	0.7630
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014219 [exp]	4.2	0.7618
AT3G62950			Thioredoxin superfamily protei...		Lus10005938 [exp]	8.7	0.7315
					Lus10027443 [exp]	8.8	0.7692
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10029419 [exp]	10.4	0.6672
					Lus10038720 [exp]	10.4	0.7714
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	16.4	0.7151
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	16.9	0.7961
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	17.0	0.7353

Compare expression of checked genes

Lus10032498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.