Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51190 169 / 6e-52 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 147 / 3e-43 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G47230 135 / 3e-38 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT4G17490 120 / 2e-32 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G07580 117 / 2e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47220 112 / 8e-30 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 110 / 8e-29 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT3G23230 102 / 5e-27 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT5G43410 101 / 7e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23240 102 / 4e-26 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042996 [exp] 355 / 1e-124 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10032498 [exp] 116 / 1e-31 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10013959 [exp] 110 / 1e-30 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10042995 [exp] 111 / 8e-30 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10025430 [exp] 106 / 2e-28 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1) Lus10004368 [exp] 109 / 4e-28 AT4G17500 268 / 7e-90 ethylene responsive element binding factor 1 (.1) Lus10006579 [exp] 107 / 8e-28 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10021873 [exp] 105 / 8e-28 AT3G23230 143 / 4e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10011830 [exp] 103 / 2e-27 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150800 [exp] 174 / 3e-53 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 168 / 5e-51 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G080600 [exp] 145 / 2e-41 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.001G154200 [exp] 138 / 6e-39 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.001G079600 [exp] 123 / 4e-34 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 122 / 1e-33 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 111 / 4e-30 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.001G154100 [exp] 110 / 7e-29 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 109 / 1e-28 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.004G051800 [exp] 109 / 2e-28 AT4G18450 127 / 7e-35 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10032499 pacid=23146369 polypeptide=Lus10032499 locus=Lus10032499.g ID=Lus10032499.BGIv1.0 annot-version=v1.0 ATGGCTTTCCCCCATCCAGAAGCATCTACCCTCGACACCATCCGCCAATACCTCCTCGCCGACTGCACTGCTTCCATGGATTCCTACATCTCCCATCTCA ATCTCGTCAAAACTGAGATCCAAGACCATACCACCACCAAGCTTTCTCCATCTTCCTCTTCTTCCTCCTCTTCCCTCAGCCAGAGGAGGAAGCCTTCCAT GATATCCAACATCTCAATCCCTCGTCCCTCCCCTCCCGTCGACCCGACCCGAATCCAACCCGATTCGGATCCTGCTGAAGACGACAGGCACTACAGAGGC GTTAGGCGAAGGCCTTGGGGGAAATACGCCGCCGAGATCCGCGATCCGACGAAGAAAGGTGCACGGGTCTGGTTGGGAACCTTCGACACTGCTGTTGAAG CTGCCAAGGCCTACGACAACGCCGCCTTCCACCTCCGCGGCAGCAGAGCCATCCTCAACTTCCCGTTGGAAGCCGGCAGGAGTTCATCCTCCGCTTCCGA TTCTGGATCTCTGTTGGGGAAGGAGGATTTGATCACTGAGAACGATTCCAAGAAGAGGAAGATTGGGGAAATCGAGGATACGGATGAGGTTGTTAAGAAA GCGGCCAAGGGAGAGAATACGAACCCGGCGGCCCAAGGTGGAGCTGAGCCGGATCCGGTGCCGTTAACGCCGTCTAGCTGGAAGGATTTCTCGGACTCGA TATCCAATTCGAAAGGGATATTCAGCGTGCCGCCGTTATCTCCGTTATCGCCGATGGGGTATTCGTGGCTGATGGTGGTGTGA
AA sequence Show only first row Show all	>Lus10032499 pacid=23146369 polypeptide=Lus10032499 locus=Lus10032499.g ID=Lus10032499.BGIv1.0 annot-version=v1.0 MAFPHPEASTLDTIRQYLLADCTASMDSYISHLNLVKTEIQDHTTTKLSPSSSSSSSSLSQRRKPSMISNISIPRPSPPVDPTRIQPDSDPAEDDRHYRG VRRRPWGKYAAEIRDPTKKGARVWLGTFDTAVEAAKAYDNAAFHLRGSRAILNFPLEAGRSSSSASDSGSLLGKEDLITENDSKKRKIGEIEDTDEVVKK AAKGENTNPAAQGGAEPDPVPLTPSSWKDFSDSISNSKGIFSVPPLSPLSPMGYSWLMVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032499 [exp]	0	1
AT2G42760			unknown protein		Lus10007299 [exp]	1.4	0.8690
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042996 [exp]	1.4	0.9101
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	3.5	0.8599
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	7.5	0.8655
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	8.1	0.8108
					Lus10024821 [exp]	8.5	0.8428
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	9.5	0.8042
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	10.2	0.8418
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	12.6	0.8461
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	13.7	0.8018

Compare expression of checked genes

Lus10032499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.