Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51070 1234 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G50920 773 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 764 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT2G25140 365 / 5e-107 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 362 / 4e-106 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT1G74310 323 / 7e-93 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 239 / 8e-67 CLPB2 casein lytic proteinase B2 (.1) AT4G00650 183 / 5e-51 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1) AT3G45450 140 / 1e-35 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G48385 97 / 2e-20 FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043013 [exp] 1678 / 0 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10043012 [exp] 1083 / 0 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10043014 [exp] 846 / 0 AT5G51070 664 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10036017 [exp] 756 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 753 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 718 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016738 [exp] 477 / 3e-152 AT4G00650 193 / 8e-57 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10022433 [exp] 471 / 2e-149 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10043197 [exp] 408 / 2e-128 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112000 [exp] 1316 / 0 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 1278 / 0 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G105100 [exp] 768 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 766 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.005G197400 [exp] 347 / 2e-105 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.006G262700 [exp] 353 / 1e-102 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.004G124800 [exp] 348 / 3e-101 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 343 / 2e-99 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G057000 [exp] 327 / 2e-94 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 325 / 1e-93 AT1G74310 1566 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component PF07899 [flax] [poplar] Frigida Frigida-like protein CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10032514 pacid=23146423 polypeptide=Lus10032514 locus=Lus10032514.g ID=Lus10032514.BGIv1.0 annot-version=v1.0 ATGAAACTTGTACTTGCTTCCTCTCCTCTTTCTCTCCATTCCCGTTCCCCTCCTTTGACTTCCTTCCACCACCATCCTTCTTCCCCTTCTCAATCCCTTC CTTCTTCTTCCTCTGCTCGTTGTTTCGGCGTTTCCATTTCTCATCATAATCACAACCACCTCTCTTCCAGAATCAGATGCAGCCGTTCCAGGAAGAAAAG CCGTCGTACAGTCTTCACCGTTTCCGCCGTCTTCGAGAGGTTCACCGAGCGAGCTATCAAAGCCGTGATTTTCTCCCAGAGAGAAGCTCAAGCGTTGGGG AAGGATACTGTTGCCCCTCAGCACCTCTTGCTCGGTCTAATCGTTGAGGATCGTGACCTTGATGGATTCCTTGGGTCTGGAATCACTATCGACCGTGGTA GACAAGTTGTTAGGGAGATTTGGGTTAACGATGGTGATGATGCTGCGGATCATCATCCGACTTCTTCTTCTTCTACTTCTACTACGGATATGCCTTTCTC TGCTGCCACCAAACGTGTTTTCGAGGCTGCGGTTGAGTATTCCAGGAATATGAAGCATAAGTTCATTTCCCCTGAGCATATTGCTATTGGCTTGTTCACC GTTGATGATGGAAGTGCAGCTCAAGTTTGTCAAAGATTAGGGGTAAATTCAAATCACTTGGCAGCTGTGGCAATCACCAGATTGCAAGGAGAGCTAGCCA AGGATGGAAGAGGAGAACCATCTCTGTCCAAAGGGACAAGTGAGAAAGTTCTATCTAAAAGAGCTGTCGCTTTAAGATCCGCTGAAAAAGCTAAGGAGAA AAGTGCCCTGGCCCAATTCTGTGTAGATATTACCTCTCGAGCTGTTGAAGGGCGCATCGATCCAGTTATCGGACGAGAGAGTGAGATTCAAAGAGTTATT CAGATACTTTGCCGCAGAACCAAGAACAATCCGATTCTTCTTGGTGAAAGTGGAGTTGGGAAAACGGCCATTGCTGAAGGACTAGGAATGAAAATTGCTC AGGCTGAAGTGCCTGCTTCCCTCTTAGGAAAACGTGTCATCTCTTTGGATATTGGACTGTTAATTGCTGGTGCAAAGGAAAGGGGAGAACTTGAGTCACG TGTTACTTCATTAATCAAAGAGATACGAGAAGAAGGGAATGTAGTTCTCTTCATTGATGAAGTCCATACTCTTGTTGGGTCGGGTACAGTGGGACGAAAA AGCAAGGGAAATAGCCTTGACATTGCTAATCTACTGAAGCCAGCTCTTGGAAGGGGTGAATTACAGTGTATTGCATCCACAACTATGGATGAACACAGGT CACATATTGAAAGTGATAAAGCATTGGCAAGAAGATTTCAGCCTGTCATGATTAACGAACCGAGCCAGGAGGATGCTGTCAGGATATTGCTGGGTTTACG TCAAAAGTACGAGACCCATCATAACTGCAGATATACATTGGAAGCAATAAATGCAGCAGTTCATTTGTCAGCAAGATATATTGCTGATAGATTTCTGCCA GATAAAGCTATTGATCTCATTGACGAGGCAGGAAGCAGAGCTCGTATTGAAGCTTACAGGAAGAAGAAAGAACAGCAAACTGGTATACTGTCAAAGTCAC CAGATGATTATTGGCAGGAAATCAGAACTGTTCAGGCCATGCATCAAGTGGTTATTTCAAGTAAGCCAATCGCTGATGATAGTGAATCAAGCATTGATGA TGATTCCGGAGAACTCAAATCAGAGCCGCCTTCACCTTCTACATCTGATAATGCTGAACCCATGGTGGTGGGGCTTAATGACATTGCCTCTGTGGCTTCG CTCTGGTCCGGGATCCCTGTTCAGCAACTCACTGCTGATGAAAGAATTGCTCTCGTGGGTCTCGAGGAACAGCTTAGGAAAAGAGTCGTTGGCCAAGATG AGGCTGTTGGTGCTATATCTAGAGCTGTTAAGAGGTCTCGTTTCGGCCTCAAAGACCCCAATAGACCAATTGCAGCATTACTTTTCTGTGGTCCTACTGG TGTTGGAAAAACGGAGCTAACTAAAGCACTGGCTGCATGCTACTTCGGAACCGAGTCCTCAATGCTCAGATTGGACATGAGTGAATATATGGAGCGACAC ACGGTGAGCAAACTAATCGGAGCACCTCCGGGTTATGTCGGTCATGGTGAGGGAGGCACGCTTACCGAAGCTATCAGAAGACAACCTTTCACGTTGGTTC TACTTGACGAGATAGAGAAGGCTCATCCAGATATCTTCAATATCCTCCTCCAAGTATTTGAAGATGGCCACCTAACAGATTCTCAGGGCCGAAGAGTATC GTTCAAGAACGCTTTGATAGTTATGACCTCTAACATCGGATCTTCCGCAATCGCAAAAGGAGGGCGTACTTCCATTGGGTTTGTATCTGGAGCTGATCAA TCTTCTACTTCATACGTGGGAATGAAGGAAATGGTGATGGAGGAACTCAAGTCATATTTCCGCCCCGAGTTGCTGAACAGAATAGACGAACTAGTCGTAT TCCGCGCACTTGAGAAGACTCAGATGCTGGAGATTGTGAACATGATGCTGGAAGAAGTGAAAGGAAGACTGATATCTCTTGGGATCGGGTTGGAGGTATC CGATTCGATCAAGGATTTGGTCTGCAAGCAAGGTTATGACCCGGCTTATGGTGCGCGGCCGCTAAGGCGAGCAGTCACCCAGGTAATAGAGAACCCATTG AGTGAAGCTTTACTTGGTGGAGGATTCAAACCAGGCGACACAGCTCTAGTGGATGTTGATGCGACCGGGAACCCTGTCGTTGTAAATCGAGAGATGGAGC CTTCCCAACCGGATTCCAATTCCGATTTGTCGTCGACGAACACCCTTGTATTAGGTTTTCCGTTGCCTATCTCATTTGTCTTCCCTCTCCGATCGGAAGC ATACTTCGCTCGACTGACTTCCATGGAGAAACCTCCCGTCTCTAATCTCGCGGTTCCTGCTGCTGCCACCTCCCCACCAAAATCAGCCATTGCTCAGGTG GAGCTCGAATCAGAATCAACGCCGCAGCTACCACTGGAAGCGAATGGCCTCCCGATCGTCGAATTTTCGCAACACGAGGAGCAGCAGCAGTCTCGGATTT TGGATTCGGTGGAAGGATTATCCACTGTATCATCCGCCATTCAGAAATTCAGGAGCAGGTTCGACGAATTGGAGAAGCATCTCAATTTCGTCCGGATTGC TTTGGAGGTTCGGGAGCAGCCGTACGGTAAAATCGACGGAGGCACAGCGAAGCCAGGAGGAGGAGCCAGGGCCGAGTTACATAGCCTTTGCGAGACCATG TGCGGCAGAAGTCTGCGTAAGTACATCATCGCTCGCTTAGACGACGTCCAGAAGCTACGTCGAGAAGTGCCATCGGCTCTTAAAAGAGCTCGGAAGCCAG CAAAGCTCGTGATGGATTGCATCGGGGGGTTTTACCTTCAAGGGAGCAGGGCTTACACCAAGGACTCTCCGATGATTCCAGGAAGAGAAGCTTGCATTCT TGCTCTGGAGTTTTTGTTGATGACGATTGAAGGTGAAGTGGAACTGGATGACAAGGTGAGGCAAGAGTCGATTCAGGCTGCTGTGAATTGGAGAAAGAGG CTTGTAATGGAAGGCGGCCTTCGTAAGGCTAGCGAAATGGATGCCAAGGGTTTGCTTATCTTCATCGCGTGTTATGGTATTCCAAAGCTGTTCAAGAATG AGGACATTTGGGATTTGGTTCTTGCTTGTAACAATGGCCCCGTTTTTGAGGTTCTCAGAACCTCCCGTGTTCTTGTTAACAGAATTACAGATGTCATAGA GCAAATGATCACCAGTGGAACGAAAGAAAGTATAAAACTCGAGGCTGTCGATGTGGCTTCTAGTTTTGAGATTGATGATAGGTATCCTCCTCAAAAAATT CTAACAGCATACCTTCGGGATTCCAAAGATGCAATGAAGAAGAGAAGACGAGAAGCAAATAATTCGCCTATATTGCTGAAACAAGCAAACGACCGCCATT TGACTGCTCTGAAATCTGTCATGAAGTTCCTCGAGGATCGTAACCTCGATCCTTTGAAGGTCATTCCCGGATGGCAATTCGCAAAGAAGATAAGCAAGTT GGAAGAAGAAAACGTCGATCTGAACAAAAAAATCCTCGACAAAGCAACGAACAAGAGGAGAGCTGATGTGAACGACATGTCCAATAGAAGGAATCATCAA AACATCAAACGTCCACGAGCTAACGGTCAAGCCTTCCCGCCATTTCCCTCGCCAGGGATTAGGTTGCATGAACCGAACGCCGCTTCAGCAACCTACTTGA TGGATAGTCAGCTCCATTACAATAATTCATTGAGGGTAATCCAACTCCCGGGTTATGGAGGAGGAGGAGGAGAAGCGTATCCTTCATCGACATCGGCGCC CTACTCATCTGCTGCTGGCCGACCATGGCCGGAAAATGTTGCAGTCGGCGGAGGAGGAGGAGAGTTGATGCGTGGTGCCGGAGTAGGCTACCCGCCTGCT GCTGCATACAATGTCCCATCATCGAGTGCCTCTGCAGGAACTATAGCTAGTATTCTTCGGCTGCAGGAAGTTGTCGATCGGGCTGGGCAAATCGGTGGGA ATAACAACAATAACAATGTGCCATATGGATTGTACGGATCAACGACTTCGCTAGAAGGATTTCCCGGTCTGCAGAATTCAGCATTGCAGCCGAGTGGTAC TGCTGCCAATCCAGCAGAGTTGTATAGTTTTGCAGACGGCGTAGTAGATGTCAAGCATAACGGCGGTGTTTGA
AA sequence Show only first row Show all	>Lus10032514 pacid=23146423 polypeptide=Lus10032514 locus=Lus10032514.g ID=Lus10032514.BGIv1.0 annot-version=v1.0 MKLVLASSPLSLHSRSPPLTSFHHHPSSPSQSLPSSSSARCFGVSISHHNHNHLSSRIRCSRSRKKSRRTVFTVSAVFERFTERAIKAVIFSQREAQALG KDTVAPQHLLLGLIVEDRDLDGFLGSGITIDRGRQVVREIWVNDGDDAADHHPTSSSSTSTTDMPFSAATKRVFEAAVEYSRNMKHKFISPEHIAIGLFT VDDGSAAQVCQRLGVNSNHLAAVAITRLQGELAKDGRGEPSLSKGTSEKVLSKRAVALRSAEKAKEKSALAQFCVDITSRAVEGRIDPVIGRESEIQRVI QILCRRTKNNPILLGESGVGKTAIAEGLGMKIAQAEVPASLLGKRVISLDIGLLIAGAKERGELESRVTSLIKEIREEGNVVLFIDEVHTLVGSGTVGRK SKGNSLDIANLLKPALGRGELQCIASTTMDEHRSHIESDKALARRFQPVMINEPSQEDAVRILLGLRQKYETHHNCRYTLEAINAAVHLSARYIADRFLP DKAIDLIDEAGSRARIEAYRKKKEQQTGILSKSPDDYWQEIRTVQAMHQVVISSKPIADDSESSIDDDSGELKSEPPSPSTSDNAEPMVVGLNDIASVAS LWSGIPVQQLTADERIALVGLEEQLRKRVVGQDEAVGAISRAVKRSRFGLKDPNRPIAALLFCGPTGVGKTELTKALAACYFGTESSMLRLDMSEYMERH TVSKLIGAPPGYVGHGEGGTLTEAIRRQPFTLVLLDEIEKAHPDIFNILLQVFEDGHLTDSQGRRVSFKNALIVMTSNIGSSAIAKGGRTSIGFVSGADQ SSTSYVGMKEMVMEELKSYFRPELLNRIDELVVFRALEKTQMLEIVNMMLEEVKGRLISLGIGLEVSDSIKDLVCKQGYDPAYGARPLRRAVTQVIENPL SEALLGGGFKPGDTALVDVDATGNPVVVNREMEPSQPDSNSDLSSTNTLVLGFPLPISFVFPLRSEAYFARLTSMEKPPVSNLAVPAAATSPPKSAIAQV ELESESTPQLPLEANGLPIVEFSQHEEQQQSRILDSVEGLSTVSSAIQKFRSRFDELEKHLNFVRIALEVREQPYGKIDGGTAKPGGGARAELHSLCETM CGRSLRKYIIARLDDVQKLRREVPSALKRARKPAKLVMDCIGGFYLQGSRAYTKDSPMIPGREACILALEFLLMTIEGEVELDDKVRQESIQAAVNWRKR LVMEGGLRKASEMDAKGLLIFIACYGIPKLFKNEDIWDLVLACNNGPVFEVLRTSRVLVNRITDVIEQMITSGTKESIKLEAVDVASSFEIDDRYPPQKI LTAYLRDSKDAMKKRRREANNSPILLKQANDRHLTALKSVMKFLEDRNLDPLKVIPGWQFAKKISKLEEENVDLNKKILDKATNKRRADVNDMSNRRNHQ NIKRPRANGQAFPPFPSPGIRLHEPNAASATYLMDSQLHYNNSLRVIQLPGYGGGGGEAYPSSTSAPYSSAAGRPWPENVAVGGGGGELMRGAGVGYPPA AAYNVPSSSASAGTIASILRLQEVVDRAGQIGGNNNNNNVPYGLYGSTTSLEGFPGLQNSALQPSGTAANPAELYSFADGVVDVKHNGGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10032514 [exp]	0	1
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10000663 [exp]	3.5	0.8669
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	4.9	0.8539
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10028135 [exp]	8.1	0.8742
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10021803 [exp]	13.5	0.7868
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	15.5	0.8478
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	17.0	0.8541
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009040 [exp]	21.9	0.8083
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10029180 [exp]	27.9	0.8454
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	30.9	0.8509
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	31.7	0.8362

Compare expression of checked genes

Lus10032514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.